RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 DCP1AQ9NPI6 582 aaPredicted RBP7.07□□□□□ -1.28
VPS50-214ENST00000477935 CRTAC1Q9NQ79 661 aa7.07□□□□□ -1.28
VPS50-214ENST00000477935 IMPACTQ9P2X3 320 aa7.07□□□□□ -1.28
VPS50-214ENST00000477935 RAPGEF6Q8TEU7 1601 aa7.07□□□□□ -1.28
VPS50-214ENST00000477935 TBX1O43435 398 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 ITGAVP06756 1048 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 PNLIPP16233 465 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 PRKCAP17252 672 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 PDE6BP35913 854 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 ADGRF1Q5T601 910 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 GTF2IRD2BQ6EKJ0 949 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 NPM2Q86SE8 214 aaKnown RBP7.06□□□□□ -1.28
VPS50-214ENST00000477935 GTF2IRD2Q86UP8 949 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 ZNF227Q86WZ6 799 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 KSR1Q8IVT5 923 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 NUP43Q8NFH3 380 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 COPS5Q92905 334 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 TRIM55Q9BYV6 548 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 EPB41L4BQ9H329 900 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 KCNK12Q9HB15 430 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 LRP2BPQ9P2M1 347 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 ACSL6Q9UKU0 697 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 FAM135BQ49AJ0 1406 aa7.06□□□□□ -1.28
VPS50-214ENST00000477935 KDM5CP41229 1560 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 CEP170BQ9Y4F5 1589 aaPredicted RBP7.05□□□□□ -1.28
VPS50-214ENST00000477935 GTF2F1P35269 517 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS50-214ENST00000477935 SCRN1Q12765 414 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 SLC10A6Q3KNW5 377 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 FAM84AQ96KN4 292 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 EPN3Q9H201 632 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 NKX2-4Q9H2Z4 354 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 CYP26B1Q9NR63 512 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 PPP1R1BQ9UD71 204 aaPredicted RBP7.05□□□□□ -1.28
VPS50-214ENST00000477935 CTTNBP2Q8WZ74 1663 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 ALKQ9UM73 1620 aa7.05□□□□□ -1.28
VPS50-214ENST00000477935 A2ML1A8K2U0 1454 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 OR14I1A6ND48 311 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 L1CAMP32004 1257 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 ARL4AP40617 200 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 CYP4F8P98187 520 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 ZNF605Q86T29 641 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 FBXO15Q8NCQ5 510 aaPredicted RBP7.04□□□□□ -1.28
VPS50-214ENST00000477935 BTN2A2Q8WVV5 523 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 ARMC5Q96C12 935 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 GPRC5CQ9NQ84 441 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 PRXQ9BXM0 1461 aa7.04□□□□□ -1.28
VPS50-214ENST00000477935 DIP2CQ9Y2E4 1556 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 A0A1W2PQ27 194 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 A0A1W2PQ64 194 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 A0A1W2PQC6 194 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 A0A1W2PQD8 194 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 THBDP07204 575 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 MSL3P1P0C860 447 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 PAMP19021 973 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 SDHBP21912 280 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 ERVFRD-1P60508 538 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 MVKQ03426 396 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 LAPTM5Q13571 262 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 KRTAP9-2Q9BYQ4 174 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 ZNF552Q9H707 407 aaPredicted RBP7.03□□□□□ -1.28
VPS50-214ENST00000477935 TNFRSF12AQ9NP84 129 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS50-214ENST00000477935 MROH2AA6NES4 1674 aa7.03□□□□□ -1.28
VPS50-214ENST00000477935 LRRC7Q96NW7 1537 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 TRBV23OR9-2A0A075B6M9 112 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 NPHP3-ACAD11A0A0J9YXS1 232 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.02□□□□□ -1.29
VPS50-214ENST00000477935 U2SURPO15042 1029 aaKnown RBP7.02□□□□□ -1.29
VPS50-214ENST00000477935 C8AP07357 584 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 CORO7P57737 925 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 CYP4F3Q08477 520 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 SF3A1Q15459 793 aaKnown RBP7.02□□□□□ -1.29
VPS50-214ENST00000477935 NBPF6Q5VWK0 638 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 SYDE1Q6ZW31 735 aaPredicted RBP7.02□□□□□ -1.29
VPS50-214ENST00000477935 NBPF4Q96M43 638 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 SLC38A3Q99624 504 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 HIRIP3Q9BW71 556 aaPredicted RBP7.02□□□□□ -1.29
VPS50-214ENST00000477935 CLEC1BQ9P126 229 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 MED14O60244 1454 aa7.02□□□□□ -1.29
VPS50-214ENST00000477935 ZNF142P52746 1687 aaPredicted RBP7.02□□□□□ -1.29
VPS50-214ENST00000477935 NPHP4O75161 1426 aaPredicted RBP7.01□□□□□ -1.29
VPS50-214ENST00000477935 VWDEQ8N2E2 1590 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 AGRPO00253 132 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 SNRPB2P08579 225 aaKnown RBP7.01□□□□□ -1.29
VPS50-214ENST00000477935 PLS3P13797 630 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 HOXC12P31275 282 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 GGT6Q6P531 493 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 CPNE8Q86YQ8 564 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 ST13P5Q8NFI4 369 aaPredicted RBP7.01□□□□□ -1.29
VPS50-214ENST00000477935 NLGN2Q8NFZ4 835 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 GOLGA2P5Q9HBQ8 144 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 MSRB2Q9Y3D2 182 aa7.01□□□□□ -1.29
VPS50-214ENST00000477935 JCADQ9P266 1359 aa7□□□□□ -1.29
VPS50-214ENST00000477935 MYOCOSA0A1B0GUC4 107 aa7□□□□□ -1.29
VPS50-214ENST00000477935 A0A1W2PQU0 124 aa7□□□□□ -1.29
VPS50-214ENST00000477935 CAPNS1P04632 268 aa7□□□□□ -1.29
VPS50-214ENST00000477935 MPOP05164 745 aa7□□□□□ -1.29
VPS50-214ENST00000477935 SCG5P05408 212 aa7□□□□□ -1.29
VPS50-214ENST00000477935 PPP2R2AP63151 447 aa7□□□□□ -1.29
VPS50-214ENST00000477935 RBL2Q08999 1139 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms