RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CCDC105Q8IYK2 499 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 MYOCDQ8IZQ8 938 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 MIGA1Q8NAN2 632 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 SUMF1Q8NBK3 374 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 CYP2W1Q8TAV3 490 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 KCNG4Q8TDN1 519 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 AFAP1L1Q8TED9 768 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 SAMD11Q96NU1 681 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 PURBQ96QR8 312 aaKnown RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 CRBNQ96SW2 442 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 NUP88Q99567 741 aaPredicted RBP5.89□□□□□ -1.47
USP4-209ENST00000475873 TEX13BQ9BXU2 312 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 AP5M1Q9H0R1 490 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 SNRKQ9NRH2 765 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 LRP2BPQ9P2M1 347 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 FBXO3Q9UK99 471 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 NBEAQ8NFP9 2946 aa5.89□□□□□ -1.47
USP4-209ENST00000475873 DSPP15924 2871 aaKnown RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 MPHOSPH10O00566 681 aaKnown RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 ZEB2O60315 1214 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 BAG3O95817 575 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 CYP2E1P05181 493 aaPredicted RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 MYL3P08590 195 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 CYP2D6P10635 497 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 CKBP12277 381 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 COPB2P35606 906 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 CLCN5P51795 746 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 BFSP2Q13515 415 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 MVPQ14764 893 aaKnown RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 KIAA0319Q5VV43 1072 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 NFRKBQ6P4R8 1299 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 EFHBQ8N7U6 833 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 RUBCNQ92622 972 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 MTG1Q9BT17 334 aaPredicted RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 RAVER2Q9HCJ3 691 aaKnown RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 PIH1D3Q9NQM4 214 aaKnown RBP5.88□□□□□ -1.47
USP4-209ENST00000475873 Q9Y3F1 56 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 DMXL2Q8TDJ6 3036 aa5.88□□□□□ -1.47
USP4-209ENST00000475873 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.87□□□□□ -1.47
USP4-209ENST00000475873 E9PSI1 815 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 ATP2A1O14983 1001 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 ASGR2P07307 311 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 ATF7P17544 494 aaPredicted RBP5.87□□□□□ -1.47
USP4-209ENST00000475873 TGM1P22735 817 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 CTNNB1P35222 781 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 SLC4A3P48751 1232 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 ICA1Q05084 483 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 IKBKEQ14164 716 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 HIC1Q14526 733 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 RALBP1Q15311 655 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 PTGISQ16647 500 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 DUSP28Q4G0W2 176 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 ZNF618Q5T7W0 954 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 IQSEC1Q6DN90 963 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 POTEHQ6S545 545 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 TMEM179Q6ZVK1 233 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 CPXCR1Q8N123 301 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 DTWD2Q8NBA8 298 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 DBF4BQ8NFT6 615 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 CAGE1Q8TC20 777 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 DYNLL2Q96FJ2 89 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 CHAMP1Q96JM3 812 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 NOL10Q9BSC4 688 aaKnown RBP5.87□□□□□ -1.47
USP4-209ENST00000475873 S1PR5Q9H228 398 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 RC3H2Q9HBD1 1191 aaKnown RBP5.87□□□□□ -1.47
USP4-209ENST00000475873 COPRSQ9NQ92 184 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 A1CFQ9NQ94 594 aaKnown RBP5.87□□□□□ -1.47
USP4-209ENST00000475873 KIAA1671Q9BY89 1806 aa5.87□□□□□ -1.47
USP4-209ENST00000475873 MYH8P13535 1937 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 GREB1LQ9C091 1923 aaPredicted RBP5.86□□□□□ -1.47
USP4-209ENST00000475873 SOBPA7XYQ1 873 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 UPP2O95045 317 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 MMP1P03956 469 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 EEF2P13639 858 aaKnown RBP5.86□□□□□ -1.47
USP4-209ENST00000475873 AOC1P19801 751 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 CYP7A1P22680 504 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 BMPR1AP36894 532 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 NRIP1P48552 1158 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 TTC6Q86TZ1 520 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 ANKRD35Q8N283 1001 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 MORC4Q8TE76 937 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 RIN2Q8WYP3 895 aaPredicted RBP5.86□□□□□ -1.47
USP4-209ENST00000475873 KAT2BQ92831 832 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 COPS5Q92905 334 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 TOP1MTQ969P6 601 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 YME1L1Q96TA2 773 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 HAUS7Q99871 368 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 HINFPQ9BQA5 517 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 SLF1Q9BQI6 1058 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.86□□□□□ -1.47
USP4-209ENST00000475873 LMAN2LQ9H0V9 348 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 SEMA4AQ9H3S1 761 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 HOMER2Q9NSB8 354 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 POLR3EQ9NVU0 708 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 SORCS3Q9UPU3 1222 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 LAMA5O15230 3695 aa5.86□□□□□ -1.47
USP4-209ENST00000475873 A6NJR5 290 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 C2CD4DB7Z1M9 353 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 EFCAB14O75071 495 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 ITGB1P05556 798 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms