RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PARNO95453 639 aaKnown RBP14.85□□□□□ -0.03
SKA3-206ENST00000475251 NOVP48745 357 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 TAP1Q03518 808 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 RNF207Q6ZRF8 634 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 CAGE1Q8TC20 777 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 ANAPC4Q9UJX5 808 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 RCAN3Q9UKA8 241 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 SCN10AQ9Y5Y9 1956 aa14.85□□□□□ -0.03
SKA3-206ENST00000475251 SCN5AQ14524 2016 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 NFIBO00712 420 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 ORC4O43929 436 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 NMT2O60551 498 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 TOP1P11387 765 aaKnown RBP14.84□□□□□ -0.03
SKA3-206ENST00000475251 CALML3P27482 149 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 CTDSPL2Q05D32 466 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 TMEM31Q5JXX7 168 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 AFAP1L1Q8TED9 768 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 LMCD1Q9NZU5 365 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 XIRP2A4UGR9 3374 aa14.84□□□□□ -0.03
SKA3-206ENST00000475251 TXNP10599 105 aaKnown RBP14.83□□□□□ -0.04
SKA3-206ENST00000475251 SLC16A2P36021 539 aa14.83□□□□□ -0.04
SKA3-206ENST00000475251 SLC30A10Q6XR72 485 aa14.83□□□□□ -0.04
SKA3-206ENST00000475251 LRFN3Q9BTN0 628 aa14.83□□□□□ -0.04
SKA3-206ENST00000475251 ZBED2Q9BTP6 218 aa14.83□□□□□ -0.04
SKA3-206ENST00000475251 MAF1Q9H063 256 aa14.83□□□□□ -0.04
SKA3-206ENST00000475251 TOMM22Q9NS69 142 aa14.83□□□□□ -0.04
SKA3-206ENST00000475251 EPOPA6NHQ4 379 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 EFCAB14O75071 495 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 EDNRBP24530 442 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 RPS6P62753 249 aaKnown RBP14.82□□□□□ -0.04
SKA3-206ENST00000475251 GRB10Q13322 594 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 PTGISQ16647 500 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 TTBK2Q6IQ55 1244 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 RASGRP2Q7LDG7 609 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 PI4K2BQ8TCG2 481 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 EPHX3Q9H6B9 360 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 BDP1A6H8Y1 2624 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 WDR19Q8NEZ3 1342 aa14.82□□□□□ -0.04
SKA3-206ENST00000475251 PRRC2BQ5JSZ5 2229 aaKnown RBP14.82□□□□□ -0.04
SKA3-206ENST00000475251 TRANK1O15050 2925 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 FGRP09769 529 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 CNKSR3Q6P9H4 555 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 SESTD1Q86VW0 696 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 CLEC4DQ8WXI8 215 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 TMEM47Q9BQJ4 181 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 GPCPD1Q9NPB8 672 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 TCP11L1Q9NUJ3 509 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 FRMPD2Q68DX3 1309 aaPredicted RBP14.81□□□□□ -0.04
SKA3-206ENST00000475251 REV3LO60673 3130 aa14.81□□□□□ -0.04
SKA3-206ENST00000475251 GPR37L1O60883 481 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 SELPP16109 830 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 MX1P20591 662 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 CHMP4BP1P59074 171 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 WDR5P61964 334 aaKnown RBP14.8□□□□□ -0.04
SKA3-206ENST00000475251 ALX1Q15699 326 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 KRT40Q6A162 431 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 LRRC8DQ7L1W4 858 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 RGS22Q8NE09 1264 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 TTC14Q96N46 770 aa14.8□□□□□ -0.04
SKA3-206ENST00000475251 ZBTB47Q9UFB7 747 aaPredicted RBP14.8□□□□□ -0.04
SKA3-206ENST00000475251 ABHD14A-ACY1A0A1B0GW23 586 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 FOXP2O15409 715 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 LPXNO60711 386 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 GH1P01241 217 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 PDHBP11177 359 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 PCP11498 1178 aaKnown RBP14.79□□□□□ -0.04
SKA3-206ENST00000475251 CASTP20810 708 aaKnown RBP14.79□□□□□ -0.04
SKA3-206ENST00000475251 COL4A4P53420 1690 aaPredicted RBP14.79□□□□□ -0.04
SKA3-206ENST00000475251 RBL2Q08999 1139 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 ZNF543Q08ER8 600 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 RRP12Q5JTH9 1297 aaKnown RBP14.79□□□□□ -0.04
SKA3-206ENST00000475251 GPATCH4Q5T3I0 446 aaKnown RBP14.79□□□□□ -0.04
SKA3-206ENST00000475251 C20orf194Q5TEA3 1177 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 MIER1Q8N108 512 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 PIP4P2Q8N4L2 257 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 COPS5Q92905 334 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 RAD9AQ99638 391 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 KATNAL1Q9BW62 490 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 INCENPQ9NQS7 918 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 HELLSQ9NRZ9 838 aa14.79□□□□□ -0.04
SKA3-206ENST00000475251 ARHGEF15O94989 841 aa14.78□□□□□ -0.04
SKA3-206ENST00000475251 MMP3P08254 477 aa14.78□□□□□ -0.04
SKA3-206ENST00000475251 EVI5LQ96CN4 794 aa14.78□□□□□ -0.04
SKA3-206ENST00000475251 TGS1Q96RS0 853 aaKnown RBP14.78□□□□□ -0.04
SKA3-206ENST00000475251 CRBNQ96SW2 442 aa14.78□□□□□ -0.04
SKA3-206ENST00000475251 ZMYM6O95789 1325 aa14.77□□□□□ -0.04
SKA3-206ENST00000475251 GJB5O95377 273 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 CXCL10P02778 98 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 NT5C2P49902 561 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 IKBKEQ14164 716 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 DGKDQ16760 1214 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 GDF6Q6KF10 455 aaPredicted RBP14.77□□□□□ -0.05
SKA3-206ENST00000475251 TICAM2Q86XR7 235 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 MCF2L2Q86YR7 1114 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 C7orf31Q8N865 590 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 NSUN6Q8TEA1 469 aaKnown RBP14.77□□□□□ -0.05
SKA3-206ENST00000475251 GDPD5Q8WTR4 605 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 PPP1R13LQ8WUF5 828 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 AFG1LQ8WV93 481 aa14.77□□□□□ -0.05
SKA3-206ENST00000475251 IWS1Q96ST2 819 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms