RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NECTIN1Q15223 517 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 CENPQQ7L2Z9 268 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-204ENST00000475218 RALYLQ86SE5 291 aaKnown RBP16.42■□□□□ 0.22
UPF3A-204ENST00000475218 PIGSQ96S52 555 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 AMNQ9BXJ7 453 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 TRPV6Q9H1D0 765 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 MRPL11Q9Y3B7 192 aaKnown RBP16.42■□□□□ 0.22
UPF3A-204ENST00000475218 PRUNE2Q8WUY3 3088 aa16.42■□□□□ 0.22
UPF3A-204ENST00000475218 SLC27A2O14975 620 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 B4GALT4O60513 344 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 WTAPQ15007 396 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 BMP2KLQ5H9B9 411 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 TMEM67Q5HYA8 995 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 MFSD5Q6N075 450 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 OR6J1Q8NGC5 347 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 SCFD2Q8WU76 684 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 VWCEQ96DN2 955 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 RMDN3Q96TC7 470 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 A6NJR5 290 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 PPP2R5BQ15173 497 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 MCF2L2Q86YR7 1114 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 NSUN6Q8TEA1 469 aaKnown RBP16.41■□□□□ 0.22
UPF3A-204ENST00000475218 PPP1R13LQ8WUF5 828 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 MYL10Q9BUA6 226 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 PPP1R12CQ9BZL4 782 aa16.41■□□□□ 0.22
UPF3A-204ENST00000475218 UNC80Q8N2C7 3258 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 CFBP00751 764 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 TXNP10599 105 aaKnown RBP16.4■□□□□ 0.22
UPF3A-204ENST00000475218 CSF2RAP15509 400 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 CYP2C18P33260 490 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 CREB3L3Q68CJ9 461 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 FAM109BQ6ICB4 259 aaPredicted RBP16.4■□□□□ 0.22
UPF3A-204ENST00000475218 HOMER1Q86YM7 354 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 GUCD1Q96NT3 240 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.4■□□□□ 0.221e-8■■■■□ 25.1
UPF3A-204ENST00000475218 PXMP2Q9NR77 195 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 CHD7Q9P2D1 2997 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 PCDHA1Q9Y5I3 950 aa16.4■□□□□ 0.22
UPF3A-204ENST00000475218 ZEB2O60315 1214 aa16.39■□□□□ 0.21
UPF3A-204ENST00000475218 RGS20O76081 388 aa16.39■□□□□ 0.21
UPF3A-204ENST00000475218 EIF2AK2P19525 551 aaKnown RBP16.39■□□□□ 0.21
UPF3A-204ENST00000475218 HOXA13P31271 388 aaPredicted RBP16.39■□□□□ 0.21
UPF3A-204ENST00000475218 ARHGAP1Q07960 439 aa16.39■□□□□ 0.21
UPF3A-204ENST00000475218 LY6KQ17RY6 165 aa16.39■□□□□ 0.21
UPF3A-204ENST00000475218 IL31RAQ8NI17 732 aa16.39■□□□□ 0.21
UPF3A-204ENST00000475218 IWS1Q96ST2 819 aa16.39■□□□□ 0.21
UPF3A-204ENST00000475218 NOC4LQ9BVI4 516 aaKnown RBP16.39■□□□□ 0.21
UPF3A-204ENST00000475218 ALDH8A1Q9H2A2 487 aaPredicted RBP16.39■□□□□ 0.21
UPF3A-204ENST00000475218 SH2B2O14492 632 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 NKRFO15226 690 aaKnown RBP eCLIP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 PRC1O43663 620 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 CPT1AP50416 773 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 TMEM240Q5SV17 173 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 RASIP1Q5U651 963 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 SEPT14Q6ZU15 432 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 ZNF654Q8IZM8 581 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 RNPC3Q96LT9 517 aaKnown RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 WNT8AQ9H1J5 351 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 ERICH2A1L162 156 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 TLR3O15455 904 aaKnown RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 NR3C2P08235 984 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 MYL3P08590 195 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 SMAD3P84022 425 aaKnown RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 SART3Q15020 963 aaKnown RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 CATIPQ7Z7H3 387 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 MPHOSPH6Q99547 160 aaKnown RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 PDCD2LQ9BRP1 358 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 TTYH1Q9H313 450 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 TRMT13Q9NUP7 481 aaKnown RBP16.38■□□□□ 0.21
UPF3A-204ENST00000475218 POLR3EQ9NVU0 708 aa16.38■□□□□ 0.21
UPF3A-204ENST00000475218 PNMA6FA0A0J9YX94 578 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 ACRP10323 421 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 TTLL4Q14679 1199 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 STXBP2Q15833 593 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 ARHGEF16Q5VV41 709 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 AFG1LQ8WV93 481 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 FAM161BQ96MY7 647 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 MAP3K14Q99558 947 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 MTG1Q9BT17 334 aaPredicted RBP16.37■□□□□ 0.21
UPF3A-204ENST00000475218 HIPK3Q9H422 1215 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 ANO2Q9NQ90 1003 aa16.37■□□□□ 0.21
UPF3A-204ENST00000475218 DDX41Q9UJV9 622 aaKnown RBP16.37■□□□□ 0.21
UPF3A-204ENST00000475218 B4DLN1 442 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 PLEKHA8P1O95397 391 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 MRPL12P52815 198 aaKnown RBP16.36■□□□□ 0.21
UPF3A-204ENST00000475218 NBPF20Q3BBV1 942 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 MTA3Q9BTC8 594 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 LRRC2Q9BYS8 371 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 STXBP5LQ9Y2K9 1186 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 EIF3JO75822 258 aaKnown RBP16.36■□□□□ 0.21
UPF3A-204ENST00000475218 DDAH1O94760 285 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 MMP3P08254 477 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 CYP2C9P11712 490 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 RXRAP19793 462 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 MCM5P33992 734 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 SRBD1Q8N5C6 995 aaKnown RBP16.36■□□□□ 0.21
UPF3A-204ENST00000475218 PIBF1Q8WXW3 757 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 KAT2BQ92831 832 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 ZFP91Q96JP5 570 aaPredicted RBP16.36■□□□□ 0.21
UPF3A-204ENST00000475218 CTAGE1Q96RT6 745 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms