RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 B4DLN1 442 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 SOX1O00570 391 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-203ENST00000474056 MRPL12P52815 198 aaKnown RBP20.8■□□□□ 0.92
UPF3A-203ENST00000474056 ADCK5Q3MIX3 580 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 CXCL17Q6UXB2 119 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 ANKRD33Q7Z3H0 272 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 TMTC2Q8N394 836 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 NSUN6Q8TEA1 469 aaKnown RBP20.8■□□□□ 0.92
UPF3A-203ENST00000474056 NEK1Q96PY6 1258 aa20.8■□□□□ 0.92
UPF3A-203ENST00000474056 ARIH2O95376 493 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 PLEKHA8P1O95397 391 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 EIF2AK2P19525 551 aaKnown RBP20.79■□□□□ 0.92
UPF3A-203ENST00000474056 ITGB8P26012 769 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 CDK7P50613 346 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 FAAP100Q0VG06 881 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 PPP2R5BQ15173 497 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 TSGA10IPQ3SY00 556 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 ARHGEF16Q5VV41 709 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 OR6J1Q8NGC5 347 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 SCFD2Q8WU76 684 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 COPS5Q92905 334 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 BADQ92934 168 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 TCEANC2Q96MN5 208 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 TOX2Q96NM4 488 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 SPZ1Q9BXG8 430 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 PXMP2Q9NR77 195 aa20.79■□□□□ 0.92
UPF3A-203ENST00000474056 DCDC2CA8MYV0 355 aa20.78■□□□□ 0.92
UPF3A-203ENST00000474056 ARVCFO00192 962 aa20.78■□□□□ 0.92
UPF3A-203ENST00000474056 ZEB2O60315 1214 aa20.78■□□□□ 0.92
UPF3A-203ENST00000474056 HOXA13P31271 388 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-203ENST00000474056 KIF5BP33176 963 aa20.78■□□□□ 0.92
UPF3A-203ENST00000474056 MROH7Q68CQ1 1323 aa20.78■□□□□ 0.92
UPF3A-203ENST00000474056 NKRFO15226 690 aaKnown RBP eCLIP20.77■□□□□ 0.92
UPF3A-203ENST00000474056 CABYRO75952 493 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 SEPT14Q6ZU15 432 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 SGMS1Q86VZ5 419 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 CMTR1Q8N1G2 835 aaKnown RBP20.77■□□□□ 0.92
UPF3A-203ENST00000474056 SRBD1Q8N5C6 995 aaKnown RBP20.77■□□□□ 0.92
UPF3A-203ENST00000474056 LRCH3Q96II8 777 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 IWS1Q96ST2 819 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 TMEM39AQ9NV64 488 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 MAP3K20Q9NYL2 800 aaKnown RBP20.77■□□□□ 0.92
UPF3A-203ENST00000474056 SLC12A7Q9Y666 1083 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 DOCK5Q9H7D0 1870 aa20.77■□□□□ 0.92
UPF3A-203ENST00000474056 KIAA0355O15063 1070 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 NR3C2P08235 984 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 CALM1P0DP23 149 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 CALM2P0DP24 149 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 CALM3P0DP25 149 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 TXNP10599 105 aaKnown RBP20.76■□□□□ 0.91
UPF3A-203ENST00000474056 EXOSC10Q01780 885 aaKnown RBP20.76■□□□□ 0.91
UPF3A-203ENST00000474056 TRAF1Q13077 416 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 TTLL4Q14679 1199 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 STXBP2Q15833 593 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 MICU3Q86XE3 530 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 FAM126BQ8IXS8 530 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 SAMD3Q8N6K7 520 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 RRP36Q96EU6 259 aaKnown RBP20.76■□□□□ 0.91
UPF3A-203ENST00000474056 PDCD2LQ9BRP1 358 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 GRIN2DO15399 1336 aa20.76■□□□□ 0.91
UPF3A-203ENST00000474056 GCOM1H8Y6P7 765 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-203ENST00000474056 POLR2MP0CAP2 368 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 RAG1P15918 1043 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 SMARCA1P28370 1054 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 GNAQP50148 359 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 PSMC6P62333 389 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 ITGA7Q13683 1181 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 CCDC62Q6P9F0 684 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 DHX32Q7L7V1 743 aaKnown RBP20.75■□□□□ 0.91
UPF3A-203ENST00000474056 SLC43A3Q8NBI5 491 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 LZTS2Q9BRK4 669 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 PPP4R2Q9NY27 417 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 TBX21Q9UL17 535 aa20.75■□□□□ 0.91
UPF3A-203ENST00000474056 CPT1AP50416 773 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 KRT32Q14532 448 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 PGM5Q15124 567 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 LY6KQ17RY6 165 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 LRIT3Q3SXY7 679 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 APOA5Q6Q788 366 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 FANCBQ8NB91 859 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 IL31RAQ8NI17 732 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 KCNB2Q92953 911 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 POLR3EQ9NVU0 708 aa20.74■□□□□ 0.91
UPF3A-203ENST00000474056 SEC63Q9UGP8 760 aaKnown RBP20.74■□□□□ 0.91
UPF3A-203ENST00000474056 EIF3JO75822 258 aaKnown RBP20.73■□□□□ 0.91
UPF3A-203ENST00000474056 CD4P01730 458 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 MYL3P08590 195 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 MYCLP12524 364 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-203ENST00000474056 CPA1P15085 419 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 HSPA4P34932 840 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 PURAQ00577 322 aaKnown RBP20.73■□□□□ 0.91
UPF3A-203ENST00000474056 TMTC3Q6ZXV5 915 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 FCHSD1Q86WN1 690 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 CCDC82Q8N4S0 544 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 SNX14Q9Y5W7 946 aa20.73■□□□□ 0.91
UPF3A-203ENST00000474056 hCG_1642624A0A1W2PR95 340 aa20.72■□□□□ 0.91
UPF3A-203ENST00000474056 A6NJR5 290 aa20.72■□□□□ 0.91
UPF3A-203ENST00000474056 TLR3O15455 904 aaKnown RBP20.72■□□□□ 0.91
UPF3A-203ENST00000474056 RGS20O76081 388 aa20.72■□□□□ 0.91
UPF3A-203ENST00000474056 C9orf50Q5SZB4 431 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms