RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 SCRN1Q12765 414 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 UBXN11Q5T124 520 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 NT5DC1Q5TFE4 455 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 WWC2Q6AWC2 1192 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 IQCEQ6IPM2 695 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 LIPIQ6XZB0 460 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 DBX2Q6ZNG2 339 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 HOMEZQ8IX15 550 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 ADGRG2Q8IZP9 1017 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 MMP19Q99542 508 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 KRTAP4-2Q9BYR5 136 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 ACBD3Q9H3P7 528 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 CYP26B1Q9NR63 512 aa5.76□□□□□ -1.49
PRPF40A-207ENST00000471701 A0A1B0GTL3 188 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 SMARCA5O60264 1052 aaPredicted RBP5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 HTRA3P83110 453 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 SKOR2Q2VWA4 1001 aaPredicted RBP5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 VWA3BQ502W6 1294 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 LCE5AQ5TCM9 118 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 FAM169BQ8N8A8 192 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 SMARCC2Q8TAQ2 1214 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 COPS5Q92905 334 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 SPATA25Q9BR10 227 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 AP5M1Q9H0R1 490 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 PCDH18Q9HCL0 1135 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 BTG4Q9NY30 223 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 MARCH2Q9P0N8 246 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 LRP2BPQ9P2M1 347 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 APEX2Q9UBZ4 518 aa5.75□□□□□ -1.49
PRPF40A-207ENST00000471701 SARSP49591 514 aaKnown RBP5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 ZFYVE27Q5T4F4 411 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 GTF2IRD2BQ6EKJ0 949 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 GTF2IRD2Q86UP8 949 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 DCP2Q8IU60 420 aaKnown RBP5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 CARFQ8N187 725 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 ZNF513Q8N8E2 541 aaPredicted RBP5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 ZBTB8AQ96BR9 441 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 CAPN10Q9HC96 672 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 NTMQ9P121 344 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 FBLN5Q9UBX5 448 aa5.74□□□□□ -1.49
PRPF40A-207ENST00000471701 C22orf46C9J442 243 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 SSBP05455 408 aaKnown RBP eCLIP5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 CYP2C8P10632 490 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 ATF4P18848 351 aaPredicted RBP5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 SV2CQ496J9 727 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 TRIM59Q8IWR1 403 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 PLEKHO2Q8TD55 490 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 DDX11Q96FC9 970 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 BDH2Q9BUT1 245 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 KRTAP4-11Q9BYQ6 195 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 NKX2-4Q9H2Z4 354 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 KIAA1522Q9P206 1035 aaPredicted RBP5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 SIT1Q9Y3P8 196 aa5.73□□□□□ -1.49
PRPF40A-207ENST00000471701 THBDP07204 575 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 HOXC12P31275 282 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 GTF2A2P52657 109 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 GJA9P57773 515 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 RTP5Q14D33 572 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 CEP68Q76N32 757 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 FERMT3Q86UX7 667 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 DDX1Q92499 740 aaKnown RBP5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 DPF3Q92784 378 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 NOX5Q96PH1 765 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 TIMM13Q9Y5L4 95 aaPredicted RBP5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 MRVI1Q9Y6F6 885 aa5.72□□□□□ -1.49
PRPF40A-207ENST00000471701 SMAD7O15105 426 aaKnown RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 MYO1BO43795 1136 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 PRICKLE3O43900 615 aaPredicted RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 RPL11P62913 178 aaKnown RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 SMAD4Q13485 552 aaKnown RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 GNL2Q13823 731 aaKnown RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 SPATS1Q496A3 300 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 TNNI3KQ59H18 835 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 LARP1BQ659C4 914 aaKnown RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 CD300LDQ6UXZ3 194 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 ETV3LQ6ZN32 361 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 MILR1Q7Z6M3 343 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 TEX2Q8IWB9 1127 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 SEC14L1Q92503 715 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 DIO2Q92813 273 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 TRMT2BQ96GJ1 504 aaKnown RBP5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 BORCS6Q96GS4 357 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 MRGPRX3Q96LB0 322 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 CCDC140Q96MF4 163 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 ACTR10Q9NZ32 417 aa5.71□□□□□ -1.5
PRPF40A-207ENST00000471701 SGSM2O43147 1006 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 DDAH1O94760 285 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 CPP00450 1065 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 SNRPB2P08579 225 aaKnown RBP5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 ADRB1P08588 477 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 ECI1P42126 302 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 KCNJ6P48051 423 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 KIAA2012Q0VF49 1180 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 INF2Q27J81 1249 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 MROH9Q5TGP6 573 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 E4F1Q66K89 784 aaPredicted RBP5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 ZC3H18Q86VM9 953 aaKnown RBP5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 FAM178BQ8IXR5 827 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 FRS2Q8WU20 508 aa5.7□□□□□ -1.5
PRPF40A-207ENST00000471701 CHAMP1Q96JM3 812 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms