RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TMEM265A0A087WTH1 108 aa28.6■■■□□ 2.17
PTCH1-210ENST00000468211 CPT1AP50416 773 aa28.6■■■□□ 2.17
PTCH1-210ENST00000468211 GRIN2CQ14957 1233 aa28.6■■■□□ 2.17
PTCH1-210ENST00000468211 PSRC1Q6PGN9 363 aaPredicted RBP28.6■■■□□ 2.17
PTCH1-210ENST00000468211 SCFD2Q8WU76 684 aa28.6■■■□□ 2.17
PTCH1-210ENST00000468211 UBAC1Q9BSL1 405 aa28.6■■■□□ 2.17
PTCH1-210ENST00000468211 SEZ6LQ9BYH1 1024 aa28.6■■■□□ 2.17
PTCH1-210ENST00000468211 TRMT13Q9NUP7 481 aaKnown RBP28.6■■■□□ 2.17
PTCH1-210ENST00000468211 CXXC1Q9P0U4 656 aaPredicted RBP28.6■■■□□ 2.17
PTCH1-210ENST00000468211 PTH1RQ03431 593 aa28.59■■■□□ 2.17
PTCH1-210ENST00000468211 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.59■■■□□ 2.17
PTCH1-210ENST00000468211 MAFAQ8NHW3 353 aaPredicted RBP28.59■■■□□ 2.17
PTCH1-210ENST00000468211 VWCEQ96DN2 955 aa28.59■■■□□ 2.17
PTCH1-210ENST00000468211 MPHOSPH6Q99547 160 aaKnown RBP28.59■■■□□ 2.17
PTCH1-210ENST00000468211 CHD9Q3L8U1 2897 aa28.59■■■□□ 2.17
PTCH1-210ENST00000468211 MYO9BQ13459 2157 aa28.58■■■□□ 2.17
PTCH1-210ENST00000468211 BAZ2BQ9UIF8 2168 aaKnown RBP28.58■■■□□ 2.17
PTCH1-210ENST00000468211 DHX16O60231 1041 aaKnown RBP28.58■■■□□ 2.17
PTCH1-210ENST00000468211 TXNP10599 105 aaKnown RBP28.58■■■□□ 2.17
PTCH1-210ENST00000468211 IFIT1BQ5T764 474 aaKnown RBP28.58■■■□□ 2.17
PTCH1-210ENST00000468211 MTG1Q9BT17 334 aaPredicted RBP28.58■■■□□ 2.17
PTCH1-210ENST00000468211 PBX4Q9BYU1 374 aa28.58■■■□□ 2.17
PTCH1-210ENST00000468211 TAF6LQ9Y6J9 622 aa28.58■■■□□ 2.17
PTCH1-210ENST00000468211 A6NJR5 290 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 NKRFO15226 690 aaKnown RBP eCLIP28.57■■■□□ 2.16
PTCH1-210ENST00000468211 CYP2C9P11712 490 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 CHMLP26374 656 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 CCDC62Q6P9F0 684 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 FBXO11Q86XK2 927 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 HERVK_113Q902F9 699 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 TIFAQ96CG3 184 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 SCLYQ96I15 445 aa28.57■■■□□ 2.16
PTCH1-210ENST00000468211 MYH7BA7E2Y1 1941 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 OPLAHO14841 1288 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 CYP21A2P08686 494 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 FOSL2P15408 326 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 SLC35G1Q2M3R5 365 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 NBPF20Q3BBV1 942 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 RAD50Q92878 1312 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 ZNF576Q9H609 170 aa28.56■■■□□ 2.16
PTCH1-210ENST00000468211 B4DLN1 442 aa28.55■■■□□ 2.16
PTCH1-210ENST00000468211 PPP1R11O60927 126 aaPredicted RBP28.55■■■□□ 2.16
PTCH1-210ENST00000468211 FGBP02675 491 aa28.55■■■□□ 2.16
PTCH1-210ENST00000468211 MRPL12P52815 198 aaKnown RBP28.55■■■□□ 2.16
PTCH1-210ENST00000468211 TTLL4Q14679 1199 aa28.55■■■□□ 2.16
PTCH1-210ENST00000468211 OTOP2Q7RTS6 562 aa28.55■■■□□ 2.16
PTCH1-210ENST00000468211 SENP2Q9HC62 589 aa28.55■■■□□ 2.16
PTCH1-210ENST00000468211 GPHNQ9NQX3 736 aaPredicted RBP28.55■■■□□ 2.16
PTCH1-210ENST00000468211 MAD2L2Q9UI95 211 aa28.55■■■□□ 2.16
PTCH1-210ENST00000468211 MRPL11Q9Y3B7 192 aaKnown RBP28.55■■■□□ 2.16
PTCH1-210ENST00000468211 KLRF2D3W0D1 207 aa28.54■■■□□ 2.16
PTCH1-210ENST00000468211 SEPT14Q6ZU15 432 aa28.54■■■□□ 2.16
PTCH1-210ENST00000468211 NSUN6Q8TEA1 469 aaKnown RBP28.54■■■□□ 2.16
PTCH1-210ENST00000468211 RMDN3Q96TC7 470 aa28.54■■■□□ 2.16
PTCH1-210ENST00000468211 MAF1Q9H063 256 aa28.54■■■□□ 2.16
PTCH1-210ENST00000468211 TRIP12Q14669 1992 aaPredicted RBP28.53■■■□□ 2.16
PTCH1-210ENST00000468211 LY6KQ17RY6 165 aa28.53■■■□□ 2.16
PTCH1-210ENST00000468211 FAM47CQ5HY64 1035 aa28.53■■■□□ 2.16
PTCH1-210ENST00000468211 MCF2L2Q86YR7 1114 aa28.53■■■□□ 2.16
PTCH1-210ENST00000468211 MTMR8Q96EF0 704 aa28.53■■■□□ 2.16
PTCH1-210ENST00000468211 PALM3A6NDB9 673 aaPredicted RBP28.52■■■□□ 2.16
PTCH1-210ENST00000468211 EIF2AK2P19525 551 aaKnown RBP28.52■■■□□ 2.16
PTCH1-210ENST00000468211 ARHGAP1Q07960 439 aa28.52■■■□□ 2.16
PTCH1-210ENST00000468211 BRDTQ58F21 947 aaPredicted RBP28.52■■■□□ 2.16
PTCH1-210ENST00000468211 TANC1Q9C0D5 1861 aa28.52■■■□□ 2.16
PTCH1-210ENST00000468211 CFBP00751 764 aa28.51■■■□□ 2.15
PTCH1-210ENST00000468211 SUPT20HL2P0C7V6 817 aa28.51■■■□□ 2.15
PTCH1-210ENST00000468211 STOX1Q6ZVD7 989 aa28.51■■■□□ 2.15
PTCH1-210ENST00000468211 AFG1LQ8WV93 481 aa28.51■■■□□ 2.15
PTCH1-210ENST00000468211 IWS1Q96ST2 819 aa28.51■■■□□ 2.15
PTCH1-210ENST00000468211 AMNQ9BXJ7 453 aa28.51■■■□□ 2.15
PTCH1-210ENST00000468211 COL25A1Q9BXS0 654 aaPredicted RBP28.51■■■□□ 2.15
PTCH1-210ENST00000468211 KPNA6O60684 536 aa28.5■■■□□ 2.15
PTCH1-210ENST00000468211 HSD17B4P51659 736 aa28.5■■■□□ 2.15
PTCH1-210ENST00000468211 STXBP2Q15833 593 aa28.5■■■□□ 2.15
PTCH1-210ENST00000468211 ARHGEF16Q5VV41 709 aa28.5■■■□□ 2.15
PTCH1-210ENST00000468211 RUFY2Q8WXA3 655 aa28.5■■■□□ 2.15
PTCH1-210ENST00000468211 PXMP2Q9NR77 195 aa28.5■■■□□ 2.15
PTCH1-210ENST00000468211 U3KPZ7 1027 aaPredicted RBP28.5■■■□□ 2.15
PTCH1-210ENST00000468211 TET1Q8NFU7 2136 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 VCANP13611 3396 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 E7EWF7 191 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 SGSM2O43147 1006 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 MMP3P08254 477 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 TRDNQ13061 729 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 GRM4Q14833 912 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 NFRKBQ6P4R8 1299 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 CHST3Q7LGC8 479 aa28.49■■■□□ 2.15
PTCH1-210ENST00000468211 YBX2Q9Y2T7 364 aaKnown RBP28.49■■■□□ 2.15
PTCH1-210ENST00000468211 CHD7Q9P2D1 2997 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 IFIT3O14879 490 aaKnown RBP28.48■■■□□ 2.15
PTCH1-210ENST00000468211 ZBTB5O15062 677 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 GH1P01241 217 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 NR3C2P08235 984 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 CHMP4BP1P59074 171 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 GHRHRQ02643 423 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 RPUSD2Q8IZ73 545 aaKnown RBP28.48■■■□□ 2.15
PTCH1-210ENST00000468211 USP38Q8NB14 1042 aa28.48■■■□□ 2.15
PTCH1-210ENST00000468211 DDX41Q9UJV9 622 aaKnown RBP28.48■■■□□ 2.15
PTCH1-210ENST00000468211 DEFB128Q7Z7B8 93 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms