RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TEKT1Q969V4 418 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 CDK5RAP3Q96JB5 506 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 PARD6BQ9BYG5 372 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 DBNDD1Q9H9R9 158 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 MYH7BA7E2Y1 1941 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 NPR1P16066 1061 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 TRIM21P19474 475 aaKnown RBP9.99□□□□□ -0.81
SYNE1-217ENST00000466159 CLK2P49760 499 aaKnown RBP9.99□□□□□ -0.81
SYNE1-217ENST00000466159 CHMP4BP1P59074 171 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 TCP10Q12799 353 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 ECM1Q16610 540 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 QSER1Q2KHR3 1735 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 HHIPL2Q6UWX4 724 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 SRGAP1Q7Z6B7 1085 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 SNX29Q8TEQ0 813 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 RABGGTAQ92696 567 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 NOC4LQ9BVI4 516 aaKnown RBP9.99□□□□□ -0.81
SYNE1-217ENST00000466159 GTPBP4Q9BZE4 634 aaKnown RBP9.99□□□□□ -0.81
SYNE1-217ENST00000466159 TTYH3Q9C0H2 523 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 DNAJC18Q9H819 358 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 GUCA1BQ9UMX6 200 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 BRWD3Q6RI45 1802 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 ZBTB5O15062 677 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 HLA-DOAP06340 250 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 CRKP46108 304 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 PDIA5Q14554 519 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 TSR1Q2NL82 804 aaKnown RBP9.99□□□□□ -0.81
SYNE1-217ENST00000466159 CENPPQ6IPU0 288 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 RAD54LQ92698 747 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 HAS1Q92839 578 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 CUL5Q93034 780 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 STK17AQ9UEE5 414 aa9.99□□□□□ -0.81
SYNE1-217ENST00000466159 DDX25Q9UHL0 483 aaKnown RBP9.99□□□□□ -0.81
SYNE1-217ENST00000466159 IDEP14735 1019 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 ALDH1B1P30837 517 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PLA2G4AP47712 749 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 HERVK_113P62684 666 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 GPATCH4Q5T3I0 446 aaKnown RBP9.98□□□□□ -0.81
SYNE1-217ENST00000466159 UTP14CQ5TAP6 766 aaKnown RBP9.98□□□□□ -0.81
SYNE1-217ENST00000466159 KRT79Q5XKE5 535 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PPP4R3AQ6IN85 833 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 CC2D1AQ6P1N0 951 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-217ENST00000466159 UNC13DQ70J99 1090 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 KIAA0825Q8IV33 1275 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 FAM114A1Q8IWE2 563 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 NLGN1Q8N2Q7 840 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 GLIS3Q8NEA6 775 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PCMTD1Q96MG8 357 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-217ENST00000466159 NAPGQ99747 312 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-217ENST00000466159 RAB34Q9BZG1 259 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PSTPIP2Q9H939 334 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 MYO3BQ8WXR4 1341 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L15C9J2P7 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L13C9JLJ4 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L11C9JVI0 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L18D6R9N7 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L22D6RA61 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L17D6RBQ6 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L19D6RCP7 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L20D6RJB6 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 ERCC3P19447 782 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PPP1R2P41236 205 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 MRPL12P52815 198 aaKnown RBP9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L24Q0WX57 530 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 COBLL1Q53SF7 1204 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PPP1R18Q6NYC8 613 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L6PQ6QN14 398 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 DDX12PQ92771 950 aa9.98□□□□□ -0.81
SYNE1-217ENST00000466159 PVALEFA0A1B0GWK0 134 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 DDTLA6NHG4 134 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 SASH3O75995 380 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 MMP10P09238 476 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 GABPB1Q06547 395 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 LRRC41Q15345 812 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 MEA1Q16626 185 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 ZSCAN29Q8IWY8 852 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 CEP112Q8N8E3 955 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 ZNF622Q969S3 477 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 MTMR8Q96EF0 704 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 NUP58Q9BVL2 599 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 MYO1AQ9UBC5 1043 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 GREB1LQ9C091 1923 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 MARCH6O60337 910 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 TBC1D8O95759 1140 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 EEF2P13639 858 aaKnown RBP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 ZBED6P86452 979 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 TMEM119Q4V9L6 283 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 MASTLQ96GX5 879 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 NHEJ1Q9H9Q4 299 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-217ENST00000466159 PCDHA12Q9UN75 941 aa9.97□□□□□ -0.81
SYNE1-217ENST00000466159 COL11A2P13942 1736 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-217ENST00000466159 NRXN2Q9P2S2 1712 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 RCCD1A6NED2 376 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ENC1O14682 589 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 PDE6BP35913 854 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 RBM5P52756 815 aaKnown RBP eCLIP9.96□□□□□ -0.81
SYNE1-217ENST00000466159 TERF2Q15554 542 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 QRICH1Q2TAL8 776 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 CCDC122Q5T0U0 273 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 MSL1Q68DK7 614 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms