RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 FOSL2P15408 326 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CALML3P27482 149 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CST5P28325 142 aaPredicted RBP21.48■■□□□ 1.03
HOXD3-204ENST00000459979 KIF5BP33176 963 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 ALDH5A1P51649 535 aaPredicted RBP21.48■■□□□ 1.03
HOXD3-204ENST00000459979 NKX3-2P78367 333 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 ADCK5Q3MIX3 580 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CTCFLQ8NI51 663 aaPredicted RBP21.48■■□□□ 1.03
HOXD3-204ENST00000459979 GLT1D1Q96MS3 346 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 LZTS2Q9BRK4 669 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 UPF3AQ9H1J1 476 aaKnown RBP21.48■■□□□ 1.03
HOXD3-204ENST00000459979 VTA1Q9NP79 307 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 TBX21Q9UL17 535 aa21.48■■□□□ 1.03
HOXD3-204ENST00000459979 DDX49Q9Y6V7 483 aaKnown RBP21.48■■□□□ 1.03
HOXD3-204ENST00000459979 CDH23Q9H251 3354 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.47■■□□□ 1.03
HOXD3-204ENST00000459979 PPP1R11O60927 126 aaPredicted RBP21.47■■□□□ 1.03
HOXD3-204ENST00000459979 TIMP1P01033 207 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 PTGS1P23219 599 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 EDNRBP24530 442 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 GNAQP50148 359 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 GNASQ5JWF2 1037 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 TAPT1Q6NXT6 567 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 NFXL1Q6ZNB6 911 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 SAMD3Q8N6K7 520 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.47■■□□□ 1.03
HOXD3-204ENST00000459979 SPZ1Q9BXG8 430 aa21.47■■□□□ 1.03
HOXD3-204ENST00000459979 MAP3K20Q9NYL2 800 aaKnown RBP21.47■■□□□ 1.03
HOXD3-204ENST00000459979 PNMA6FA0A0J9YX94 578 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 GJA9P57773 515 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 BEX3Q00994 111 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 IQSEC1Q6DN90 963 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 PCSK9Q8NBP7 692 aaKnown RBP21.46■■□□□ 1.03
HOXD3-204ENST00000459979 TBC1D5Q92609 795 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 PIGSQ96S52 555 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 MPHOSPH6Q99547 160 aaKnown RBP21.46■■□□□ 1.03
HOXD3-204ENST00000459979 PPP1R12CQ9BZL4 782 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 SPC25Q9HBM1 224 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 SLC12A7Q9Y666 1083 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 ELP1O95163 1332 aa21.46■■□□□ 1.03
HOXD3-204ENST00000459979 GBF1Q92538 1859 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 B4DLN1 442 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 OPLAHO14841 1288 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 CTAGE5O15320 804 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 DNAJB2P25686 324 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 CDK7P50613 346 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 MRPL12P52815 198 aaKnown RBP21.45■■□□□ 1.02
HOXD3-204ENST00000459979 SYTL5Q8TDW5 730 aaPredicted RBP21.45■■□□□ 1.02
HOXD3-204ENST00000459979 MYL10Q9BUA6 226 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 LRRC2Q9BYS8 371 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 GNEQ9Y223 722 aaKnown RBP21.45■■□□□ 1.02
HOXD3-204ENST00000459979 PCDHA1Q9Y5I3 950 aa21.45■■□□□ 1.02
HOXD3-204ENST00000459979 A0A0U1RQG5 324 aaPredicted RBP21.44■■□□□ 1.02
HOXD3-204ENST00000459979 RBM47A0AV96 593 aaKnown RBP21.44■■□□□ 1.02
HOXD3-204ENST00000459979 ARVCFO00192 962 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 HSD17B4P51659 736 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 TNFAIP2Q03169 654 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 GRIN2CQ14957 1233 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 MFSD5Q6N075 450 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 NOL8Q76FK4 1167 aaKnown RBP21.44■■□□□ 1.02
HOXD3-204ENST00000459979 C16orf59Q7L2K0 433 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 FANCBQ8NB91 859 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 Q9Y3F1 56 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 SNX14Q9Y5W7 946 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 MROH7Q68CQ1 1323 aa21.44■■□□□ 1.02
HOXD3-204ENST00000459979 MYO9BQ13459 2157 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.43■■□□□ 1.02
HOXD3-204ENST00000459979 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.43■■□□□ 1.02
HOXD3-204ENST00000459979 GRXCR1A8MXD5 290 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 ACRP10323 421 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 CSF2RAP15509 400 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 HOMER1Q86YM7 354 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 FBXO16Q8IX29 292 aaPredicted RBP21.43■■□□□ 1.02
HOXD3-204ENST00000459979 FAM126BQ8IXS8 530 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 FBXL16Q8N461 479 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 NSUN6Q8TEA1 469 aaKnown RBP21.43■■□□□ 1.02
HOXD3-204ENST00000459979 IWS1Q96ST2 819 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 PDGFCQ9NRA1 345 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 COL20A1Q9P218 1284 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 PRUNE2Q8WUY3 3088 aa21.43■■□□□ 1.02
HOXD3-204ENST00000459979 TMEM265A0A087WTH1 108 aa21.42■■□□□ 1.02
HOXD3-204ENST00000459979 SMPD1P17405 629 aa21.42■■□□□ 1.02
HOXD3-204ENST00000459979 PPIGQ13427 754 aaKnown RBP eCLIP21.42■■□□□ 1.02
HOXD3-204ENST00000459979 TMEM240Q5SV17 173 aa21.42■■□□□ 1.02
HOXD3-204ENST00000459979 APOA5Q6Q788 366 aa21.42■■□□□ 1.02
HOXD3-204ENST00000459979 EEPD1Q7L9B9 569 aa21.42■■□□□ 1.02
HOXD3-204ENST00000459979 SRBD1Q8N5C6 995 aaKnown RBP21.42■■□□□ 1.02
HOXD3-204ENST00000459979 TAAR1Q96RJ0 339 aa21.42■■□□□ 1.02
HOXD3-204ENST00000459979 PBX2P40425 430 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 RCAN1P53805 252 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 PDE4DQ08499 809 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 DUSP28Q4G0W2 176 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 CXCL17Q6UXB2 119 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 SYNE3Q6ZMZ3 975 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 TLK2Q86UE8 772 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 USP38Q8NB14 1042 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 TIFAQ96CG3 184 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 RRP36Q96EU6 259 aaKnown RBP21.41■■□□□ 1.02
HOXD3-204ENST00000459979 USP26Q9BXU7 913 aa21.41■■□□□ 1.02
HOXD3-204ENST00000459979 TLR3O15455 904 aaKnown RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms