RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 FOXR2Q6PJQ5 311 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 UNC13DQ70J99 1090 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 MSL3Q8N5Y2 521 aaKnown RBP12.21□□□□□ -0.45
RFX3-211ENST00000458034 TBC1D16Q8TBP0 767 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 RPGRIP1Q96KN7 1286 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 GPR101Q96P66 508 aaPredicted RBP12.21□□□□□ -0.45
RFX3-211ENST00000458034 ERGIC2Q96RQ1 377 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 PLIN2Q99541 437 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 DUSP9Q99956 384 aaKnown RBP12.21□□□□□ -0.45
RFX3-211ENST00000458034 NOC4LQ9BVI4 516 aaKnown RBP12.21□□□□□ -0.45
RFX3-211ENST00000458034 COA1Q9GZY4 146 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 VAT1LQ9HCJ6 419 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 LRWD1Q9UFC0 647 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 MYO6Q9UM54 1294 aa12.21□□□□□ -0.45
RFX3-211ENST00000458034 GREB1LQ9C091 1923 aaPredicted RBP12.21□□□□□ -0.46
RFX3-211ENST00000458034 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 USP17L5A8MUK1 530 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 B4DLN1 442 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 C6orf229H3BNL8 230 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 PSMD14O00487 310 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 HLA-DOAP06340 250 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 GCFC2P16383 781 aaKnown RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 TRIM21P19474 475 aaKnown RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 PMS1P54277 932 aaKnown RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 SLC27A3Q5K4L6 730 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 KRT79Q5XKE5 535 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 JAKMIP2Q96AA8 810 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 IRX2Q9BZI1 471 aaPredicted RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 TSPYL2Q9H2G4 693 aaPredicted RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 MTMR4Q9NYA4 1195 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 BIN2Q9UBW5 565 aaPredicted RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 PUF60Q9UHX1 559 aaKnown RBP12.2□□□□□ -0.46
RFX3-211ENST00000458034 RAB21Q9UL25 225 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 DAGLAQ9Y4D2 1042 aa12.2□□□□□ -0.46
RFX3-211ENST00000458034 KDM3AQ9Y4C1 1321 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 IGKV6D-41A0A0C4DH26 115 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 PNMA6FA0A0J9YX94 578 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 EIF3CLB5ME19 914 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 PPEF1O14829 653 aaPredicted RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 SEC31AO94979 1220 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 TBC1D8O95759 1140 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 TTLL1O95922 423 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 SNHG28P0DPA3 235 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 GYS1P13807 737 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 TXKP42681 527 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 MRPL12P52815 198 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 LRRC63Q05C16 580 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 LONRF2Q1L5Z9 754 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 CCDC122Q5T0U0 273 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 GPATCH4Q5T3I0 446 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 ANKRD40Q6AI12 368 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 IQCEQ6IPM2 695 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 CENPPQ6IPU0 288 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 HDXQ7Z353 690 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 AMIGO3Q86WK7 504 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 ZSCAN29Q8IWY8 852 aaPredicted RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 SP8Q8IXZ3 490 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 GUF1Q8N442 669 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 LARP4BQ92615 738 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 MTMR9Q96QG7 549 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 EIF3CQ99613 913 aaKnown RBP12.19□□□□□ -0.46
RFX3-211ENST00000458034 CHP1Q99653 195 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 RIC8AQ9NPQ8 531 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 MYH7BA7E2Y1 1941 aa12.19□□□□□ -0.46
RFX3-211ENST00000458034 FRMPD2Q68DX3 1309 aaPredicted RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 ANO9A1A5B4 782 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 POTEFA5A3E0 1075 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 MARCH6O60337 910 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 USO1O60763 962 aaKnown RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 GABPAQ06546 454 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 ZNF543Q08ER8 600 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 GRB10Q13322 594 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 SMC1AQ14683 1233 aaKnown RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 SPA17Q15506 151 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 MAN2A1Q16706 1144 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 MAP9Q49MG5 647 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 TMEM119Q4V9L6 283 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 MCTP2Q6DN12 878 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 PPP4R3AQ6IN85 833 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 DPP8Q6V1X1 898 aaPredicted RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 ARHGAP27Q6ZUM4 889 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 PROM2Q8N271 834 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 SNX29Q8TEQ0 813 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 RAD54LQ92698 747 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 CUL5Q93034 780 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 CCDC17Q96LX7 622 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 MMTAG2Q9BU76 263 aaKnown RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 EDEM3Q9BZQ6 932 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 UBXN6Q9BZV1 441 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 TTYH3Q9C0H2 523 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 UBA5Q9GZZ9 404 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 TMX4Q9H1E5 349 aaPredicted RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 BMP2KQ9NSY1 1161 aaPredicted RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 ZHX1Q9UKY1 873 aaPredicted RBP12.18□□□□□ -0.46
RFX3-211ENST00000458034 GUCA1BQ9UMX6 200 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 ARFGEF1Q9Y6D6 1849 aa12.18□□□□□ -0.46
RFX3-211ENST00000458034 UBAP1LF5GYI3 381 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 RNF225M0QZC1 329 aaPredicted RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 OAS2P29728 719 aaKnown RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 HERVK_113P62684 666 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms