RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 GPKOWQ92917 476 aaPredicted RBP eCLIP16.55■□□□□ 0.24
COL3A1-203ENST00000450867 TBC1D32Q96NH3 1257 aa16.55■□□□□ 0.24
COL3A1-203ENST00000450867 RMDN3Q96TC7 470 aa16.55■□□□□ 0.24
COL3A1-203ENST00000450867 UPF2Q9HAU5 1272 aaKnown RBP16.55■□□□□ 0.24
COL3A1-203ENST00000450867 PXMP2Q9NR77 195 aa16.55■□□□□ 0.24
COL3A1-203ENST00000450867 ESYT2A0FGR8 921 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 STXBP3O00186 592 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 ADCY6O43306 1168 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 TFRCP02786 760 aaKnown RBP16.54■□□□□ 0.24
COL3A1-203ENST00000450867 HOXA13P31271 388 aaPredicted RBP16.54■□□□□ 0.24
COL3A1-203ENST00000450867 CCDC144BQ3MJ40 725 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 HEATR3Q7Z4Q2 680 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 PDCD2LQ9BRP1 358 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 ZHX1Q9UKY1 873 aaPredicted RBP16.54■□□□□ 0.24
COL3A1-203ENST00000450867 DDX49Q9Y6V7 483 aaKnown RBP16.54■□□□□ 0.24
COL3A1-203ENST00000450867 MYH7BA7E2Y1 1941 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 CEP290O15078 2479 aa16.54■□□□□ 0.24
COL3A1-203ENST00000450867 DUSP11O75319 330 aaKnown RBP16.53■□□□□ 0.24
COL3A1-203ENST00000450867 FARP2O94887 1054 aaPredicted RBP16.53■□□□□ 0.24
COL3A1-203ENST00000450867 RARBP10826 455 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 COL6A1P12109 1028 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 PDE4DQ08499 809 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 SCRN1Q12765 414 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 IQSEC1Q6DN90 963 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 FBXO16Q8IX29 292 aaPredicted RBP16.53■□□□□ 0.24
COL3A1-203ENST00000450867 FAM177A1Q8N128 213 aaPredicted RBP16.53■□□□□ 0.24
COL3A1-203ENST00000450867 PHKBQ93100 1093 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 LARP6Q9BRS8 491 aaKnown RBP16.53■□□□□ 0.24
COL3A1-203ENST00000450867 GLT8D2Q9H1C3 349 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 UPF3AQ9H1J1 476 aaKnown RBP16.53■□□□□ 0.24
COL3A1-203ENST00000450867 PSTPIP2Q9H939 334 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 RIC8AQ9NPQ8 531 aa16.53■□□□□ 0.24
COL3A1-203ENST00000450867 STK36Q9NRP7 1315 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 ADAMTS4O75173 837 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 NR3C2P08235 984 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 CST5P28325 142 aaPredicted RBP16.52■□□□□ 0.24
COL3A1-203ENST00000450867 NAPAP54920 295 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 PGM5Q15124 567 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 RABEP1Q15276 862 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 STXBP2Q15833 593 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 ME3Q16798 604 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 ARHGEF16Q5VV41 709 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 CPLX2Q6PUV4 134 aaKnown RBP16.52■□□□□ 0.24
COL3A1-203ENST00000450867 USP17L6PQ6QN14 398 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 VSIG10LQ86VR7 867 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 ARRDC4Q8NCT1 418 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 CUL5Q93034 780 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 GTF3C6Q969F1 213 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 SLKQ9H2G2 1235 aaPredicted RBP16.52■□□□□ 0.24
COL3A1-203ENST00000450867 GNEQ9Y223 722 aaKnown RBP16.52■□□□□ 0.24
COL3A1-203ENST00000450867 Q9Y3F1 56 aa16.52■□□□□ 0.24
COL3A1-203ENST00000450867 DNAH12Q6ZR08 3092 aa16.52■□□□□ 0.23
COL3A1-203ENST00000450867 SYNRGQ9UMZ2 1314 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 DNM1LO00429 736 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 CPLX1O14810 134 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 EIF3JO75822 258 aaKnown RBP16.51■□□□□ 0.23
COL3A1-203ENST00000450867 CDKL5O76039 1030 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 DEXIO95424 95 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 LARGE1O95461 756 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 EIF2AK2P19525 551 aaKnown RBP16.51■□□□□ 0.23
COL3A1-203ENST00000450867 ADCYAP1R1P41586 468 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 GJA9P57773 515 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 TNFAIP2Q03169 654 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 STK3Q13188 491 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 DUSP28Q4G0W2 176 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 XRRA1Q6P2D8 792 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 TRIM22Q8IYM9 498 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 SCFD2Q8WU76 684 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 CCDC12Q8WUD4 166 aaPredicted RBP16.51■□□□□ 0.23
COL3A1-203ENST00000450867 SLC26A6Q9BXS9 759 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 ZMYND12Q9H0C1 365 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 XPNPEP3Q9NQH7 507 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 SH3GLB2Q9NR46 395 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 PDGFCQ9NRA1 345 aa16.51■□□□□ 0.23
COL3A1-203ENST00000450867 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 STAM2O75886 525 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 CLK2P49760 499 aaKnown RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 AKAP17AQ02040 695 aaKnown RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 MLLT1Q03111 559 aaPredicted RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 SSRP1Q08945 709 aaKnown RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 LRRC41Q15345 812 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 ANO1Q5XXA6 986 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 CCDC62Q6P9F0 684 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 EEPD1Q7L9B9 569 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 NECAB2Q7Z6G3 386 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 KLHDC9Q8NEP7 349 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 IL31RAQ8NI17 732 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 SMARCC2Q8TAQ2 1214 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 DIS3LQ8TF46 1054 aaKnown RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 LENG1Q96BZ8 264 aaPredicted RBP16.5■□□□□ 0.23
COL3A1-203ENST00000450867 LIMCH1Q9UPQ0 1083 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 DOCK5Q9H7D0 1870 aa16.5■□□□□ 0.23
COL3A1-203ENST00000450867 NKRFO15226 690 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL3A1-203ENST00000450867 CTAGE5O15320 804 aa16.49■□□□□ 0.23
COL3A1-203ENST00000450867 RGS20O76081 388 aa16.49■□□□□ 0.23
COL3A1-203ENST00000450867 CTDNEP1O95476 244 aa16.49■□□□□ 0.23
COL3A1-203ENST00000450867 FOSP01100 380 aaPredicted RBP16.49■□□□□ 0.23
COL3A1-203ENST00000450867 SMPD1P17405 629 aa16.49■□□□□ 0.23
COL3A1-203ENST00000450867 CCND2P30279 289 aa16.49■□□□□ 0.23
COL3A1-203ENST00000450867 ADCY7P51828 1080 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms