RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	CTAGE4	Q8IX94	777 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	CCDC170	Q8IYT3	715 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	LARP4B	Q92615	738 aa	Known RBP	18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	JMJD4	Q9H9V9	463 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	RIC8A	Q9NPQ8	531 aa		18.9	■□□□□ 0.62
TOM1-210	ENST00000449058	PNMA6F	A0A0J9YX94	578 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	MAP2K7	O14733	419 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	CDK17	Q00537	523 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	TRAPPC11	Q7Z392	1133 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	ANKRD31	Q8N7Z5	1873 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	SLC39A2	Q9NP94	309 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	GPCPD1	Q9NPB8	672 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	MYH4	Q9Y623	1939 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	EIF3CL	B5ME19	914 aa	Known RBP	18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	TTLL1	O95922	423 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	CYLC1	P35663	651 aa	Predicted RBP	18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	CLK2	P49760	499 aa	Known RBP	18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	PPP4R3A	Q6IN85	833 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	CLEC10A	Q8IUN9	316 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	CERS5	Q8N5B7	392 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	RAD54L	Q92698	747 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	IQCD	Q96DY2	449 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	EIF3C	Q99613	913 aa	Known RBP	18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	RAB34	Q9BZG1	259 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	ZNHIT6	Q9NWK9	470 aa	Known RBP	18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	SWAP70	Q9UH65	585 aa		18.89	■□□□□ 0.61
TOM1-210	ENST00000449058	MYH7B	A7E2Y1	1941 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	PPEF1	O14829	653 aa	Predicted RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	NKRF	O15226	690 aa	Known RBP eCLIP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	PPP1R11	O60927	126 aa	Predicted RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	HOXA7	P31268	230 aa	Predicted RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	SMC1A	Q14683	1233 aa	Known RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	TMEM119	Q4V9L6	283 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	BEND6	Q5SZJ8	279 aa	Predicted RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	CCDC122	Q5T0U0	273 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	ADGRF4	Q8IZF3	695 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	GUF1	Q8N442	669 aa	Known RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	SERPINB13	Q9UIV8	391 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	ADAMTSL1	Q8N6G6	1762 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	ABCB11	O95342	1321 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	EIF6	P56537	245 aa	Known RBP	18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	EHHADH	Q08426	723 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	CDK5RAP3	Q96JB5	506 aa		18.88	■□□□□ 0.61
TOM1-210	ENST00000449058	POTEM	A6NI47	508 aa		18.87	■□□□□ 0.61
TOM1-210	ENST00000449058	SHMT1	P34896	483 aa		18.87	■□□□□ 0.61
TOM1-210	ENST00000449058	FKBP15	Q5T1M5	1219 aa		18.87	■□□□□ 0.61
TOM1-210	ENST00000449058	NUDT12	Q9BQG2	462 aa		18.87	■□□□□ 0.61
TOM1-210	ENST00000449058	ATP6V0A2	Q9Y487	856 aa		18.87	■□□□□ 0.61
TOM1-210	ENST00000449058	ARFGEF1	Q9Y6D6	1849 aa		18.87	■□□□□ 0.61
TOM1-210	ENST00000449058	RIMBP2	O15034	1052 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	HNRNPH3	P31942	346 aa	Known RBP	18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	SLC27A3	Q5K4L6	730 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	PAPD7	Q5XG87	772 aa	Known RBP	18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	EHBP1	Q8NDI1	1231 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	JAKMIP2	Q96AA8	810 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	TFR2	Q9UP52	801 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	KRT86	O43790	486 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	TUBB	P07437	444 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	OAS2	P29728	719 aa	Known RBP	18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	TNNI2	P48788	182 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	VWA3B	Q502W6	1294 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	KRT79	Q5XKE5	535 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	NCAPH2	Q6IBW4	605 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	FOXR2	Q6PJQ5	311 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	KIAA1328	Q86T90	577 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	SEPT12	Q8IYM1	358 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	SNX29	Q8TEQ0	813 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	MTMR8	Q96EF0	704 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	SIK3	Q9Y2K2	1263 aa		18.86	■□□□□ 0.61
TOM1-210	ENST00000449058	RCCD1	A6NED2	376 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058		F8W031	263 aa	Predicted RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	UBE2S	Q16763	222 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	DYM	Q7RTS9	669 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	KCNK18	Q7Z418	384 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	MSL3	Q8N5Y2	521 aa	Known RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	NOA1	Q8NC60	698 aa	Known RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	PCMTD1	Q96MG8	357 aa	Predicted RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	PURB	Q96QR8	312 aa	Known RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	LRRC27	Q9C0I9	530 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	LACRT	Q9GZZ8	138 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	USP40	Q9NVE5	1235 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	ERLIN1	O75477	346 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	ATP1A1	P05023	1023 aa	Known RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	CYP2C19	P33261	490 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	LRRC63	Q05C16	580 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	PSMD2	Q13200	908 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	GPATCH4	Q5T3I0	446 aa	Known RBP	18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	TTBK2	Q6IQ55	1244 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	HAS1	Q92839	578 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	NDST4	Q9H3R1	872 aa		18.85	■□□□□ 0.61
TOM1-210	ENST00000449058	POLR3G	O15318	223 aa	Predicted RBP	18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	FGFR1OP	O95684	399 aa	Known RBP	18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	RHOXF2B	P0C7M4	288 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	MAN2A1	Q16706	1144 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	DDX12P	Q92771	950 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	CUL5	Q93034	780 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	RHOXF2	Q9BQY4	288 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	L1RE1	Q9UN81	338 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	PLAGL2	Q9UPG8	496 aa		18.84	■□□□□ 0.61

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