RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 RBM27Q9P2N5 1060 aaKnown RBP18.87■□□□□ 0.61
SF3A1-204ENST00000447376 Q9Y3F1 56 aa18.87■□□□□ 0.61
SF3A1-204ENST00000447376 PDE4DIPQ5VU43 2346 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 LCTP09848 1927 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 EDNRBP24530 442 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 HOXA13P31271 388 aaPredicted RBP18.86■□□□□ 0.61
SF3A1-204ENST00000447376 GJA9P57773 515 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 TTLL4Q14679 1199 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 GNASQ5JWF2 1037 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 FCHSD1Q86WN1 690 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 IL17RAQ96F46 866 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 C22orf23Q9BZE7 217 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 UPF3BQ9BZI7 483 aaKnown RBP18.86■□□□□ 0.61
SF3A1-204ENST00000447376 PXMP2Q9NR77 195 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 PDRG1Q9NUG6 133 aa18.86■□□□□ 0.61
SF3A1-204ENST00000447376 BAZ2BQ9UIF8 2168 aaKnown RBP18.86■□□□□ 0.61
SF3A1-204ENST00000447376 ADAMTS4O75173 837 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 CST5P28325 142 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-204ENST00000447376 ATN1P54259 1190 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-204ENST00000447376 DUSP28Q4G0W2 176 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 TAPT1Q6NXT6 567 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 CPLX2Q6PUV4 134 aaKnown RBP18.85■□□□□ 0.61
SF3A1-204ENST00000447376 C7orf61Q8IZ16 206 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 VTI1AQ96AJ9 217 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 GLT1D1Q96MS3 346 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 AGXT2Q9BYV1 514 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 UPF3AQ9H1J1 476 aaKnown RBP18.85■□□□□ 0.61
SF3A1-204ENST00000447376 PSTPIP2Q9H939 334 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 EHMT1Q9H9B1 1298 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 PDGFCQ9NRA1 345 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 PRKAG2Q9UGJ0 569 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 PHF24Q9UPV7 400 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 LRRC37A2A6NM11 1700 aa18.85■□□□□ 0.61
SF3A1-204ENST00000447376 CNTNAP5Q8WYK1 1306 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 CPLX1O14810 134 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 OPLAHO14841 1288 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 DYNC1LI2O43237 492 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 EIF3JO75822 258 aaKnown RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 NR3C2P08235 984 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 TXNP10599 105 aaKnown RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 MYCLP12524 364 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 SMPD1P17405 629 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 CCND2P30279 289 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 ACLYP53396 1101 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 NAPAP54920 295 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 ANKRD1Q15327 319 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 PPP1R18Q6NYC8 613 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 FERMT2Q96AC1 680 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 GLT8D2Q9H1C3 349 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 STARD7Q9NQZ5 370 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 COL20A1Q9P218 1284 aa18.84■□□□□ 0.61
SF3A1-204ENST00000447376 DDX49Q9Y6V7 483 aaKnown RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 V9GY48 417 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-204ENST00000447376 A0A1W2PQ45 241 aaPredicted RBP18.83■□□□□ 0.6
SF3A1-204ENST00000447376 A0A1W2PQY0 241 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 hCG_1642624A0A1W2PR95 340 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 RBM47A0AV96 593 aaKnown RBP18.83■□□□□ 0.6
SF3A1-204ENST00000447376 SPDYE3A6NKU9 549 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 CPT1AP50416 773 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 KCNA10Q16322 511 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 KCNV1Q6PIU1 500 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 SEPT14Q6ZU15 432 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 TEX2Q8IWB9 1127 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 CCDC12Q8WUD4 166 aaPredicted RBP18.83■□□□□ 0.6
SF3A1-204ENST00000447376 PDCD2LQ9BRP1 358 aa18.83■□□□□ 0.6
SF3A1-204ENST00000447376 GNEQ9Y223 722 aaKnown RBP18.83■□□□□ 0.6
SF3A1-204ENST00000447376 NID2Q14112 1375 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 PIK3CDO00329 1044 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 CABYRO75952 493 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 ASGR1P07306 291 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 CDC27P30260 824 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 ADD1P35611 737 aaKnown RBP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 RBM25P49756 843 aaKnown RBP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 PGM5Q15124 567 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 FSCN1Q16658 493 aaKnown RBP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 LRRC26Q2I0M4 334 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 GNPTABQ3T906 1256 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 SLC39A5Q6ZMH5 540 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 TRIM22Q8IYM9 498 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 KLHDC9Q8NEP7 349 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 OR6J1Q8NGC5 347 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 GPKOWQ92917 476 aaPredicted RBP eCLIP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 ZNF274Q96GC6 653 aaPredicted RBP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 ALDH8A1Q9H2A2 487 aaPredicted RBP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 ATP11BQ9Y2G3 1177 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 MRVI1Q9Y6F6 885 aa18.82■□□□□ 0.6
SF3A1-204ENST00000447376 MKI67P46013 3256 aaKnown RBP18.82■□□□□ 0.6
SF3A1-204ENST00000447376 H0YGN5 161 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 ADCY6O43306 1168 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 STAM2O75886 525 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 PDIA3P30101 505 aaKnown RBP18.81■□□□□ 0.6
SF3A1-204ENST00000447376 NEK4P51957 841 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 EVCP57679 992 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 RTP1P59025 263 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 TOB2Q14106 344 aaPredicted RBP18.81■□□□□ 0.6
SF3A1-204ENST00000447376 IL27Q8NEV9 243 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 BACH2Q9BYV9 841 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 POLR3EQ9NVU0 708 aa18.81■□□□□ 0.6
SF3A1-204ENST00000447376 ELP1O95163 1332 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms