RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 LRRFIP1Q32MZ4 808 aaKnown RBP17.03■□□□□ 0.32
HMGN1-208ENST00000443046 BRDTQ58F21 947 aaPredicted RBP17.03■□□□□ 0.32
HMGN1-208ENST00000443046 ZMYM1Q5SVZ6 1142 aa17.03■□□□□ 0.32
HMGN1-208ENST00000443046 TTBK2Q6IQ55 1244 aa17.03■□□□□ 0.32
HMGN1-208ENST00000443046 PPP1R13LQ8WUF5 828 aa17.03■□□□□ 0.32
HMGN1-208ENST00000443046 GPATCH3Q96I76 525 aa17.03■□□□□ 0.32
HMGN1-208ENST00000443046 FTOQ9C0B1 505 aaKnown RBP eCLIP17.03■□□□□ 0.327e-6■■□□□ 12.9
HMGN1-208ENST00000443046 CD320Q9NPF0 282 aa17.03■□□□□ 0.32
HMGN1-208ENST00000443046 LCHNA4D1U4 455 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 TSPY2A6NKD2 308 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 FGRP09769 529 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 FAM47CQ5HY64 1035 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 SLC30A10Q6XR72 485 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 SCFD2Q8WU76 684 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 COPS5Q92905 334 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 ANAPC4Q9UJX5 808 aa17.02■□□□□ 0.32
HMGN1-208ENST00000443046 C5orf42Q9H799 3197 aa17.02■□□□□ 0.31
HMGN1-208ENST00000443046 RAD50Q92878 1312 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.01■□□□□ 0.31
HMGN1-208ENST00000443046 SLC16A2P36021 539 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 WDR5P61964 334 aaKnown RBP17.01■□□□□ 0.31
HMGN1-208ENST00000443046 CTDSPL2Q05D32 466 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 RBL2Q08999 1139 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 PPP2R5BQ15173 497 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 SYDE2Q5VT97 1194 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 SESTD1Q86VW0 696 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 AFAP1L1Q8TED9 768 aa17.01■□□□□ 0.31
HMGN1-208ENST00000443046 TTC41PQ6P2S7 1318 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 PTPDC1A2A3K4 754 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 ORC4O43929 436 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 ARIH2O95376 493 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 CXCL10P02778 98 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 RPS6P62753 249 aaKnown RBP17■□□□□ 0.31
HMGN1-208ENST00000443046 RNF207Q6ZRF8 634 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 DNERQ8NFT8 737 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 CAGE1Q8TC20 777 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 PI4K2BQ8TCG2 481 aa17■□□□□ 0.31
HMGN1-208ENST00000443046 TXNP10599 105 aaKnown RBP16.99■□□□□ 0.31
HMGN1-208ENST00000443046 CALML3P27482 149 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 KCNJ6P48051 423 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 PDE4DQ08499 809 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 PTGISQ16647 500 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 CCDC96Q2M329 555 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 C20orf194Q5TEA3 1177 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 CCDC62Q6P9F0 684 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 TMCO2Q7Z6W1 182 aaPredicted RBP16.99■□□□□ 0.31
HMGN1-208ENST00000443046 GDPD5Q8WTR4 605 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 DHX38Q92620 1227 aaKnown RBP16.99■□□□□ 0.31
HMGN1-208ENST00000443046 SUGCTQ9HAC7 445 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 PNMA2Q9UL42 364 aa16.99■□□□□ 0.31
HMGN1-208ENST00000443046 FAM86C2PA6NEL3 165 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 RANBP6O60518 1105 aaKnown RBP16.98■□□□□ 0.31
HMGN1-208ENST00000443046 GJB5O95377 273 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 PARNO95453 639 aaKnown RBP16.98■□□□□ 0.31
HMGN1-208ENST00000443046 SELPP16109 830 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 ERVK-21P61565 698 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 DEFB103AP81534 67 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 TCTN1Q2MV58 587 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 GDF6Q6KF10 455 aaPredicted RBP16.98■□□□□ 0.31
HMGN1-208ENST00000443046 CCDC155Q8N6L0 562 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 RGS22Q8NE09 1264 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 KAT2BQ92831 832 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 RAD9AQ99638 391 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 TMEM47Q9BQJ4 181 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 TCP11L1Q9NUJ3 509 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 MTMR7Q9Y216 660 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 SIP14410 1827 aa16.98■□□□□ 0.31
HMGN1-208ENST00000443046 WDR19Q8NEZ3 1342 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 NBNO60934 754 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 TOP1P11387 765 aaKnown RBP16.97■□□□□ 0.31
HMGN1-208ENST00000443046 ALX1Q15699 326 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 LEXMQ3ZCV2 418 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 CNKSR3Q6P9H4 555 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 FAM178BQ8IXR5 827 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 MPHOSPH6Q99547 160 aaKnown RBP16.97■□□□□ 0.31
HMGN1-208ENST00000443046 UBE2ZQ9H832 354 aaPredicted RBP16.97■□□□□ 0.31
HMGN1-208ENST00000443046 NOD1Q9Y239 953 aa16.97■□□□□ 0.31
HMGN1-208ENST00000443046 FRMPD2Q68DX3 1309 aaPredicted RBP16.96■□□□□ 0.31
HMGN1-208ENST00000443046 ABHD14A-ACY1A0A1B0GW23 586 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 LINC01553A4QN01 128 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 PRR33A8MZF0 331 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 SNHG28P0DPA3 235 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 PDHBP11177 359 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 VPS53Q5VIR6 699 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 TRAF7Q6Q0C0 670 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 LRRC8DQ7L1W4 858 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 TGS1Q96RS0 853 aaKnown RBP16.96■□□□□ 0.31
HMGN1-208ENST00000443046 FSD1Q9BTV5 496 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 MAF1Q9H063 256 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 GPCPD1Q9NPB8 672 aa16.96■□□□□ 0.31
HMGN1-208ENST00000443046 MMP3P08254 477 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 CKBP12277 381 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 ARHGAP1Q07960 439 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 GJD3Q8N144 294 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.95■□□□□ 0.3
HMGN1-208ENST00000443046 AFG1LQ8WV93 481 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 ZBED2Q9BTP6 218 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 GTF2IRD1Q9UHL9 959 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 KIAA1217Q5T5P2 1943 aa16.95■□□□□ 0.3
HMGN1-208ENST00000443046 B4DLN1 442 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms