RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SHROOM1Q2M3G4 852 aaPredicted RBP6.77□□□□□ -1.33
VPS50-205ENST00000441602 NOL9Q5SY16 702 aaKnown RBP6.77□□□□□ -1.33
VPS50-205ENST00000441602 NBPF12Q5TAG4 269 aaPredicted RBP6.77□□□□□ -1.33
VPS50-205ENST00000441602 ZNF658Q5TYW1 1059 aaPredicted RBP6.77□□□□□ -1.33
VPS50-205ENST00000441602 PDXDC2PQ6P474 469 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 CNNM4Q6P4Q7 775 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 USP17L6PQ6QN14 398 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 FCHSD1Q86WN1 690 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 LDHDQ86WU2 507 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 SPC24Q8NBT2 197 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 CCDC150Q8NCX0 1101 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 ZNF280CQ8ND82 737 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 RBM46Q8TBY0 533 aaKnown RBP6.77□□□□□ -1.33
VPS50-205ENST00000441602 MTMR9Q96QG7 549 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 TTC12Q9H892 705 aaPredicted RBP6.77□□□□□ -1.33
VPS50-205ENST00000441602 ZNF112Q9UJU3 913 aa6.77□□□□□ -1.33
VPS50-205ENST00000441602 SHTN1A0MZ66 631 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 BICDL2A1A5D9 508 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 PHF20L1A8MW92 1017 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 FGFR1OPO95684 399 aaKnown RBP6.76□□□□□ -1.33
VPS50-205ENST00000441602 TPM1P09493 284 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 PLCG1P19174 1290 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 CIITAP33076 1130 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 IREB2P48200 963 aaKnown RBP6.76□□□□□ -1.33
VPS50-205ENST00000441602 FANCCQ00597 558 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 SETQ01105 290 aaPredicted RBP6.76□□□□□ -1.33
VPS50-205ENST00000441602 TKFCQ3LXA3 575 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 Q4G0T1 1027 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 SPATA1Q5VX52 437 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 FAM114A1Q8IWE2 563 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 IGSF22Q8N9C0 903 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 SPATA20Q8TB22 786 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 MBOAT7Q96N66 472 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 MAGEC2Q9UBF1 373 aaPredicted RBP6.76□□□□□ -1.33
VPS50-205ENST00000441602 ZC3H4Q9UPT8 1303 aaKnown RBP6.76□□□□□ -1.33
VPS50-205ENST00000441602 PAK1Q13153 545 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 GRAMD1CQ8IYS0 662 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 C7orf25Q9BPX7 421 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 PPP1R9AQ9ULJ8 1098 aa6.76□□□□□ -1.33
VPS50-205ENST00000441602 PVALEFA0A1B0GWK0 134 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 FOXN1O15353 648 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 GRIN3BO60391 1043 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 KRT18P05783 430 aaKnown RBP6.75□□□□□ -1.33
VPS50-205ENST00000441602 UBASH3AP57075 661 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 SNAP25P60880 206 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 SPP2Q13103 211 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 IL17AQ16552 155 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 PRR16Q569H4 304 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 KLHL10Q6JEL2 608 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 TRPM4Q8TD43 1214 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 LARP4BQ92615 738 aaKnown RBP6.75□□□□□ -1.33
VPS50-205ENST00000441602 C12orf42Q96LP6 360 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 WDR11Q9BZH6 1224 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 RPAP3Q9H6T3 665 aaPredicted RBP6.75□□□□□ -1.33
VPS50-205ENST00000441602 IFNKQ9P0W0 207 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 MYPNQ86TC9 1320 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 A0A087X0B3 334 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 MEIS2O14770 477 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 ADAMTS3O15072 1205 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 SLC37A4O43826 429 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 INPP5BP32019 993 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 OAZ1P54368 228 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 BACE1P56817 501 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 MAP3K9P80192 1104 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 C9orf131Q5VYM1 1079 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 CCDC65Q8IXS2 484 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 DHTKD1Q96HY7 919 aaPredicted RBP6.75□□□□□ -1.33
VPS50-205ENST00000441602 TSG101Q99816 390 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 KBTBD4Q9NVX7 518 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 RWDD2AQ9UIY3 292 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 NFE2L3Q9Y4A8 694 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 IQCA1LA6NCM1 817 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 SSBP05455 408 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS50-205ENST00000441602 ALAS1P13196 640 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 EPS15P42566 896 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 PDE4DQ08499 809 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 PSMD2Q13200 908 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 MTMR2Q13614 643 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 XRRA1Q6P2D8 792 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.75□□□□□ -1.33
VPS50-205ENST00000441602 USP50Q70EL3 339 aaPredicted RBP6.75□□□□□ -1.33
VPS50-205ENST00000441602 CDAN1Q8IWY9 1227 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 RAD54LQ92698 747 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 SYT17Q9BSW7 474 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 BLZF1Q9H2G9 400 aa6.75□□□□□ -1.33
VPS50-205ENST00000441602 PTPRAP18433 802 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 CLCN1P35523 988 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 PABPC4Q13310 644 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS50-205ENST00000441602 GPR162Q16538 588 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 TMEM119Q4V9L6 283 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 NCAPH2Q6IBW4 605 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 NIPA1Q7RTP0 329 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 CPXCR1Q8N123 301 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 NEK9Q8TD19 979 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 ZC3H15Q8WU90 426 aaKnown RBP6.74□□□□□ -1.33
VPS50-205ENST00000441602 PLIN2Q99541 437 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 KCNMB3Q9NPA1 279 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 HOXC10Q9NYD6 342 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 CTNND2Q9UQB3 1225 aa6.74□□□□□ -1.33
VPS50-205ENST00000441602 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms