RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TAAR1Q96RJ0 339 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 RMDN3Q96TC7 470 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 KATNBL1Q9H079 304 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 PDRG1Q9NUG6 133 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 LRRC37A2A6NM11 1700 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 CNTNAP5Q8WYK1 1306 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 OPLAHO14841 1288 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 EDNRBP24530 442 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 HOXA13P31271 388 aaPredicted RBP13.21□□□□□ -0.29
COL28A1-203ENST00000435823 ADCYAP1R1P41586 468 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 TNFAIP2Q03169 654 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 LRRC41Q15345 812 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 IQSEC1Q6DN90 963 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 LENG1Q96BZ8 264 aaPredicted RBP13.21□□□□□ -0.29
COL28A1-203ENST00000435823 IWS1Q96ST2 819 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 COL20A1Q9P218 1284 aa13.21□□□□□ -0.29
COL28A1-203ENST00000435823 DDX49Q9Y6V7 483 aaKnown RBP13.21□□□□□ -0.29
COL28A1-203ENST00000435823 TNRC18O15417 2968 aaPredicted RBP13.2□□□□□ -0.3
COL28A1-203ENST00000435823 hCG_1642624A0A1W2PR95 340 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 PGK1P00558 417 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 COL6A1P12109 1028 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 EIF2AK2P19525 551 aaKnown RBP13.2□□□□□ -0.3
COL28A1-203ENST00000435823 CDC27P30260 824 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 ADD1P35611 737 aaKnown RBP13.2□□□□□ -0.3
COL28A1-203ENST00000435823 EVCP57679 992 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 TOB2Q14106 344 aaPredicted RBP13.2□□□□□ -0.3
COL28A1-203ENST00000435823 TAPT1Q6NXT6 567 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 HEATR3Q7Z4Q2 680 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 FCHSD1Q86WN1 690 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 SMARCC2Q8TAQ2 1214 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 SENP6Q9GZR1 1112 aaPredicted RBP13.2□□□□□ -0.3
COL28A1-203ENST00000435823 PXMP2Q9NR77 195 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 NID2Q14112 1375 aa13.2□□□□□ -0.3
COL28A1-203ENST00000435823 SYNRGQ9UMZ2 1314 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 hCG_1984214I3L0E3 225 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 EVI5O60447 810 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 ADAMTS4O75173 837 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 SEC24BO95487 1268 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 PDIA3P30101 505 aaKnown RBP13.19□□□□□ -0.3
COL28A1-203ENST00000435823 AKAP17AQ02040 695 aaKnown RBP13.19□□□□□ -0.3
COL28A1-203ENST00000435823 STXBP2Q15833 593 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 C8orf34Q49A92 452 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 ZNF713Q8N859 430 aaPredicted RBP13.19□□□□□ -0.3
COL28A1-203ENST00000435823 AP5M1Q9H0R1 490 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 PSTPIP2Q9H939 334 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 PDGFCQ9NRA1 345 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 FAM217BQ9NTX9 383 aaPredicted RBP13.19□□□□□ -0.3
COL28A1-203ENST00000435823 RBM27Q9P2N5 1060 aaKnown RBP13.19□□□□□ -0.3
COL28A1-203ENST00000435823 NR2E3Q9Y5X4 410 aa13.19□□□□□ -0.3
COL28A1-203ENST00000435823 V9GY48 417 aaPredicted RBP13.19□□□□□ -0.3
COL28A1-203ENST00000435823 PDE4DIPQ5VU43 2346 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 PIK3CDO00329 1044 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 ADCY6O43306 1168 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 NR3C2P08235 984 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 C6orf222P0C671 652 aaPredicted RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 SMPD1P17405 629 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 NAPAP54920 295 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 GJA9P57773 515 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 FUT2Q10981 343 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 ANKRD1Q15327 319 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 DUSP28Q4G0W2 176 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 PPP1R18Q6NYC8 613 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 TLK2Q86UE8 772 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 PCSK9Q8NBP7 692 aaKnown RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 SCFD2Q8WU76 684 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 GPKOWQ92917 476 aaPredicted RBP eCLIP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 ZNF274Q96GC6 653 aaPredicted RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 PDCD2LQ9BRP1 358 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 TSEN34Q9BSV6 310 aaKnown RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 WDR11Q9BZH6 1224 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 UPF3AQ9H1J1 476 aaKnown RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 GNEQ9Y223 722 aaKnown RBP13.18□□□□□ -0.3
COL28A1-203ENST00000435823 Q9Y3F1 56 aa13.18□□□□□ -0.3
COL28A1-203ENST00000435823 BRCA2P51587 3418 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 RBM47A0AV96 593 aaKnown RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 MOXD2PA6NHM9 499 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 CPLX1O14810 134 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 NKRFO15226 690 aaKnown RBP eCLIP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 DYNC1LI2O43237 492 aaPredicted RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 ZEB2O60315 1214 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 EIF3JO75822 258 aaKnown RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 TXNP10599 105 aaKnown RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 MYCLP12524 364 aaPredicted RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 CST5P28325 142 aaPredicted RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 CCND2P30279 289 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 CCT2P78371 535 aaKnown RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 TTLL4Q14679 1199 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 PGM5Q15124 567 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 GNASQ5JWF2 1037 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 PRPF38BQ5VTL8 546 aaKnown RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 WWC2Q6AWC2 1192 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 CPLX2Q6PUV4 134 aaKnown RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 MAMSTRQ6ZN01 415 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 KLHDC9Q8NEP7 349 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 IL17RAQ96F46 866 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 GLT8D2Q9H1C3 349 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 ALDH8A1Q9H2A2 487 aaPredicted RBP13.17□□□□□ -0.3
COL28A1-203ENST00000435823 PHF24Q9UPV7 400 aa13.17□□□□□ -0.3
COL28A1-203ENST00000435823 MEIS2O14770 477 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms