RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 COPB1P53618 953 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 ERVK-24P63145 666 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 PABPC4Q13310 644 aaKnown RBP eCLIP9.37□□□□□ -0.91
CD44-208ENST00000428726 NR1I3Q14994 352 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 QRICH1Q2TAL8 776 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 NCAPH2Q6IBW4 605 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 POTEGQ6S5H5 508 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 POTEEQ6S8J3 1075 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 TMEM139Q8IV31 216 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 PSTPIP2Q9H939 334 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 ASTN2O75129 1339 aaPredicted RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 THSD7AQ9UPZ6 1657 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 KIAA1551Q9HCM1 1747 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 TAF1LQ8IZX4 1826 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 A0A1W2PRG0 241 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 EDIL3O43854 480 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 KRT18P05783 430 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 TRIM21P19474 475 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 CXCR5P32302 372 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 ADCY7P51828 1080 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 KIAA1755Q5JYT7 1200 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 SLFN13Q68D06 897 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 IRF2BP1Q8IU81 584 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 RDH13Q8NBN7 331 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 MMTAG2Q9BU76 263 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 EXOC1Q9NV70 894 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 RGL1Q9NZL6 768 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 OGFRQ9NZT2 677 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 FAM198AQ9UFP1 575 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 LY75O60449 1722 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 KIF2AO00139 706 aaPredicted RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 PNMA6AP0CW24 399 aaPredicted RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 KCNJ6P48051 423 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 ETF1P62495 437 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 SYCP1Q15431 976 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 KIF4BQ2VIQ3 1234 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 TRIM65Q6PJ69 517 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 APTXQ7Z2E3 356 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 ADD3Q9UEY8 706 aaKnown RBP9.37□□□□□ -0.91
CD44-208ENST00000428726 YDJCA8MPS7 323 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 SLU7O95391 586 aaKnown RBP9.36□□□□□ -0.91
CD44-208ENST00000428726 TTLL1O95922 423 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 CASQ1P31415 396 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 PPP4CP60510 307 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 ICA1Q05084 483 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 TBC1D8BQ0IIM8 1120 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 FILIP1LQ4L180 1135 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 TCP11X2Q5H9J9 407 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 FAM84AQ96KN4 292 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 EHD2Q9NZN4 543 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 DDX41Q9UJV9 622 aaKnown RBP9.36□□□□□ -0.91
CD44-208ENST00000428726 SNED1Q8TER0 1413 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 TMEM150BA6NC51 233 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 F5H6K3 240 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 PHACTR2O75167 634 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 HLA-DOAP06340 250 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 TRAPPC10P48553 1259 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 KLRC3Q07444 240 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 KCNA1Q09470 495 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 C15orf52Q6ZUT6 534 aaKnown RBP9.36□□□□□ -0.91
CD44-208ENST00000428726 SP8Q8IXZ3 490 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 NLGN1Q8N2Q7 840 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 SLC35F6Q8N357 371 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 SPATA20Q8TB22 786 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 DDX25Q9UHL0 483 aaKnown RBP9.36□□□□□ -0.91
CD44-208ENST00000428726 SPATA31A6Q5VVP1 1343 aa9.36□□□□□ -0.91
CD44-208ENST00000428726 PSDA5PKW4 1024 aaPredicted RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 RSPH10B2B2RC85 870 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 GTPBP6O43824 516 aaPredicted RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 RSPH10BP0C881 870 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 POLD1P28340 1107 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 ZNF76P36508 570 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 NAP1L1P55209 391 aaKnown RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 NBPF9Q3BBW0 867 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 CT47A1Q5JQC4 288 aaPredicted RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 SH3RF1Q7Z6J0 888 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 CERS3Q8IU89 383 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 LARGE2Q8N3Y3 721 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 CCDC148Q8NFR7 591 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 NEK11Q8NG66 645 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 UBXN4Q92575 508 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 ANKS1AQ92625 1134 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 AKT1S1Q96B36 256 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 GOLPH3Q9H4A6 298 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 PODXL2Q9NZ53 605 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 ZNF185O15231 689 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 CLIC2O15247 247 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 GRB10Q13322 594 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 LLGL1Q15334 1064 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 CDC37Q16543 378 aaPredicted RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 GSPT2Q8IYD1 628 aaKnown RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 KIAA0895Q8NCT3 520 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 DDX12PQ92771 950 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 GSDMAQ96QA5 445 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 NOC4LQ9BVI4 516 aaKnown RBP9.35□□□□□ -0.91
CD44-208ENST00000428726 TRIM9Q9C026 710 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 GJA3Q9Y6H8 435 aa9.35□□□□□ -0.91
CD44-208ENST00000428726 ROBO3Q96MS0 1386 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 KLRC4O43908 158 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 NPR1P16066 1061 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms