RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 NT5C3AQ9H0P0 336 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 TMEM60Q9H2L4 133 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 RANBP17Q9H2T7 1088 aaKnown RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 MAP3K20Q9NYL2 800 aaKnown RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 ZKSCAN5Q9Y2L8 839 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 C19orf81C9J6K1 198 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 GCOM1H8Y6P7 765 aaPredicted RBP10.64□□□□□ -0.71
HMGB4-201ENST00000425537 ADAMTS3O15072 1205 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 POLR2MP0CAP2 368 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 SREBF1P36956 1147 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 TXKP42681 527 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 ECE1P42892 770 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 KCNB1Q14721 858 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 IL17AQ16552 155 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 SHROOM1Q2M3G4 852 aaPredicted RBP10.64□□□□□ -0.71
HMGB4-201ENST00000425537 USH1GQ495M9 461 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 PDXDC2PQ6P474 469 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 MCF2L2Q86YR7 1114 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 SCYL3Q8IZE3 742 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 SPICE1Q8N0Z3 855 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 ERMNQ8TAM6 284 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 ENOX1Q8TC92 643 aaKnown RBP10.64□□□□□ -0.71
HMGB4-201ENST00000425537 ERCC4Q92889 916 aaPredicted RBP10.64□□□□□ -0.71
HMGB4-201ENST00000425537 KIFC2Q96AC6 838 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 FAM20AQ96MK3 541 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 SLF1Q9BQI6 1058 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 WDR18Q9BV38 432 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 IMPACTQ9P2X3 320 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 ZNF112Q9UJU3 913 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 PCDHA12Q9UN75 941 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 DOCK1Q14185 1865 aa10.64□□□□□ -0.71
HMGB4-201ENST00000425537 A0A087X0B3 334 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 ZBED4O75132 1171 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 CYP3A4P08684 503 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 ZNF76P36508 570 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 TECP42680 631 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 GSDMDP57764 484 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 C1QTNF8P60827 252 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 ARHGAP4P98171 946 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 KARSQ15046 597 aaKnown RBP10.63□□□□□ -0.71
HMGB4-201ENST00000425537 Q4G0T1 1027 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 HAUS3Q68CZ6 603 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 MOB2Q70IA6 237 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 SV2BQ7L1I2 683 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 ANKRD20A12PQ8NF67 263 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 MBOAT7Q96N66 472 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 MAF1Q9H063 256 aa10.63□□□□□ -0.71
HMGB4-201ENST00000425537 TTC12Q9H892 705 aaPredicted RBP10.63□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L15C9J2P7 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L13C9JLJ4 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L11C9JVI0 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L18D6R9N7 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L22D6RA61 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L17D6RBQ6 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L19D6RCP7 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L20D6RJB6 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 MEIS2O14770 477 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 FOXN1O15353 648 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 TDP2O95551 362 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 ITGBL1O95965 494 aaPredicted RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 SERPINC1P01008 464 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 RPN1P04843 607 aaKnown RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 ICAM1P05362 532 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 PRR29P0C7W0 189 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 CDK11BP21127 795 aaKnown RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 CIITAP33076 1130 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L24Q0WX57 530 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 ZYXQ15942 572 aaKnown RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 TPD52L1Q16890 204 aaPredicted RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 ZNF658Q5TYW1 1059 aaPredicted RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 SPATA1Q5VX52 437 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 ISM2Q6H9L7 571 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 USP17L6PQ6QN14 398 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 SULF1Q8IWU6 871 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 CDCA5Q96FF9 252 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 CTAGE1Q96RT6 745 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 BMP2KQ9NSY1 1161 aaPredicted RBP10.62□□□□□ -0.71
HMGB4-201ENST00000425537 KBTBD4Q9NVX7 518 aa10.62□□□□□ -0.71
HMGB4-201ENST00000425537 MYH7BA7E2Y1 1941 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 CELF2O95319 508 aaKnown RBP10.61□□□□□ -0.71
HMGB4-201ENST00000425537 PLCG1P19174 1290 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 NF2P35240 595 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 CLCN1P35523 988 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 SPAG1Q07617 926 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 GRM1Q13255 1194 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 NOL9Q5SY16 702 aaKnown RBP10.61□□□□□ -0.71
HMGB4-201ENST00000425537 NBPF12Q5TAG4 269 aaPredicted RBP10.61□□□□□ -0.71
HMGB4-201ENST00000425537 CCDC174Q6PII3 467 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 GRAMD1CQ8IYS0 662 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 ZNF280CQ8ND82 737 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 SNX29Q8TEQ0 813 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 WRNIP1Q96S55 665 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 C7orf25Q9BPX7 421 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 TANGO6Q9C0B7 1094 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 EXOC1Q9NV70 894 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 TMOD4Q9NZQ9 345 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 CCPG1Q9ULG6 757 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 TRPM7Q96QT4 1865 aa10.61□□□□□ -0.71
HMGB4-201ENST00000425537 SSC5DA1L4H1 1573 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 SYNRGQ9UMZ2 1314 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms