RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 UNC13DQ70J99 1090 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 SUGP1Q8IWZ8 645 aaKnown RBP12.23□□□□□ -0.45
LIMS1-207ENST00000422797 IFT20Q8IY31 132 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 MREGQ8N565 214 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 SPATA4Q8NEY3 305 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 FAM84BQ96KN1 310 aaPredicted RBP12.23□□□□□ -0.45
LIMS1-207ENST00000422797 NOX5Q96PH1 765 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 ZMYND12Q9H0C1 365 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 AGPAT5Q9NUQ2 364 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 MAPK8IP1Q9UQF2 711 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 DOT1LQ8TEK3 1739 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 ZNF831Q5JPB2 1677 aa12.23□□□□□ -0.45
LIMS1-207ENST00000422797 CYP2D7A0A087X1C5 515 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 CES2O00748 559 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 AKR1B10O60218 316 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 TFRCP02786 760 aaKnown RBP12.22□□□□□ -0.45
LIMS1-207ENST00000422797 IRAK1P51617 712 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 MECOMQ03112 1051 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 TMEM266Q2M3C6 531 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 EMC10Q5UCC4 262 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 ANKRD40Q6AI12 368 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 MICALCLQ6ZW33 695 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 SND1Q7KZF4 910 aaKnown RBP eCLIP12.22□□□□□ -0.45
LIMS1-207ENST00000422797 SV2BQ7L1I2 683 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 OSBPL9Q96SU4 736 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 NDST4Q9H3R1 872 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 LRWD1Q9UFC0 647 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 SIK3Q9Y2K2 1263 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 ATP8B3O60423 1300 aa12.22□□□□□ -0.45
LIMS1-207ENST00000422797 BAZ2AQ9UIF9 1905 aaKnown RBP12.22□□□□□ -0.45
LIMS1-207ENST00000422797 MACROD2A1Z1Q3 448 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 RASSF10A6NK89 507 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 RBAK-RBAKDNI3L0D1 243 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 AGPSO00116 658 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 PDE2AO00408 941 aaPredicted RBP12.21□□□□□ -0.45
LIMS1-207ENST00000422797 SRGAP2O75044 1071 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 COBLO75128 1261 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 GNA14O95837 355 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 MAGEA1P43355 309 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 C2orf54Q08AI8 447 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 INF2Q27J81 1249 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 FAM47AQ5JRC9 791 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 SLC10A5Q5PT55 438 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 SOGA3Q5TF21 947 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 C12orf60Q5U649 245 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 C8orf74Q6P047 294 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 NEK8Q86SG6 692 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 CD302Q8IX05 232 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 MAD2L2Q9UI95 211 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 MINPP1Q9UNW1 487 aa12.21□□□□□ -0.45
LIMS1-207ENST00000422797 PALM3A6NDB9 673 aaPredicted RBP12.21□□□□□ -0.46
LIMS1-207ENST00000422797 RCCD1A6NED2 376 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 BAG3O95817 575 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 HIBADHP31937 336 aaKnown RBP12.21□□□□□ -0.46
LIMS1-207ENST00000422797 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.46
LIMS1-207ENST00000422797 TFAP4Q01664 338 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 EVX2Q03828 476 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 PDXDC1Q6P996 788 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 HEATR3Q7Z4Q2 680 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 C2CD5Q86YS7 1000 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 WHAMMQ8TF30 809 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 PAGR1Q9BTK6 254 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 NYXQ9GZU5 481 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 TMEM60Q9H2L4 133 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 BTG4Q9NY30 223 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 GGA2Q9UJY4 613 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 ROBO1Q9Y6N7 1651 aa12.21□□□□□ -0.46
LIMS1-207ENST00000422797 LDHCP07864 332 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 ANXA13P27216 316 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 ATP6V1AP38606 617 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 EIF4A3P38919 411 aaKnown RBP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 PDIA5Q14554 519 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 TXNRD1Q16881 649 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 SLC9C1Q4G0N8 1177 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 C10orf76Q5T2E6 689 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 MMS22LQ6ZRQ5 1243 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 DZIP1Q86YF9 867 aaKnown RBP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 ZNF384Q8TF68 577 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 GPKOWQ92917 476 aaPredicted RBP eCLIP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 RRP36Q96EU6 259 aaKnown RBP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 CDK5RAP3Q96JB5 506 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 CEP63Q96MT8 703 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 NAP1L4Q99733 375 aaKnown RBP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 MKNK2Q9HBH9 465 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 MCM9Q9NXL9 1143 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 CEP72Q9P209 647 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 ARHGAP20Q9P2F6 1191 aa12.2□□□□□ -0.46
LIMS1-207ENST00000422797 SEC63Q9UGP8 760 aaKnown RBP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 THRAP3Q9Y2W1 955 aaKnown RBP12.2□□□□□ -0.46
LIMS1-207ENST00000422797 CCDC88AQ3V6T2 1871 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 TNRC6CQ9HCJ0 1690 aaKnown RBP12.19□□□□□ -0.46
LIMS1-207ENST00000422797 LOC102724428A0A0B4J2F2 783 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 BTNL10A8MVZ5 291 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 NMT2O60551 498 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 SERPING1P05155 500 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 TSPY3P0CV98 308 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 TSPY8P0CW00 308 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 NAPAP54920 295 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 SIK1P57059 783 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 GNGT1P63211 74 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms