RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TMTC3Q6ZXV5 915 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 CEP57Q86XR8 500 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 FAM114A1Q8IWE2 563 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 TEX11Q8IYF3 940 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 ESR2Q92731 530 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 HAUS2Q9NVX0 235 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 TSKSQ9UJT2 592 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 ARAP2Q8WZ64 1704 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 SMIM22K7EJ46 135 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 FGFR2P21802 821 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 HPDP32754 393 aaPredicted RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 BYSLQ13895 437 aaKnown RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 CDC37Q16543 378 aaPredicted RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 QPCTQ16769 361 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 ASTE1Q2TB18 679 aaPredicted RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 ARFGAP2Q8N6H7 521 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 ANKRD13CQ8N6S4 541 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 LRRC15Q8TF66 581 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 ZSCAN10Q96SZ4 725 aaPredicted RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 CARD10Q9BWT7 1032 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 PLCB1Q9NQ66 1216 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 PLCH1Q4KWH8 1693 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 COL18A1P39060 1754 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 BICDL2A1A5D9 508 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 ANKRD18BA2A2Z9 1011 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 C5orf60A6NFR6 353 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 AKR1B10O60218 316 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 MAGEA1P43355 309 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 XRCC4Q13426 336 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 LACTB2Q53H82 288 aaPredicted RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 LRIG3Q6UXM1 1119 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 CATIPQ7Z7H3 387 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 RNF10Q8N5U6 811 aaKnown RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 LPIN2Q92539 896 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 NOX5Q96PH1 765 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 LEMD3Q9Y2U8 911 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 PP2D1A8MPX8 630 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 H0YGN5 161 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 MYBP10242 640 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 CTSWP56202 376 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 MAATS1Q7Z4T9 603 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 ATP6V0A4Q9HBG4 840 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 ANAPC4Q9UJX5 808 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 NFS1Q9Y697 457 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 PAPPAQ13219 1627 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 GRID2IPA4D2P6 1211 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 BUB1O43683 1085 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 RTN2O75298 545 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 PAX7P23759 505 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 ECHS1P30084 290 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 SCTRP47872 440 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 NLRP5P59047 1200 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 PUM3Q15397 648 aaKnown RBP11.83□□□□□ -0.52
USP54-204ENST00000422491 IFIT1BQ5T764 474 aaKnown RBP11.83□□□□□ -0.52
USP54-204ENST00000422491 KRT28Q7Z3Y7 464 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 SRBD1Q8N5C6 995 aaKnown RBP11.83□□□□□ -0.52
USP54-204ENST00000422491 TBC1D22AQ8WUA7 517 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 SEC16BQ96JE7 1060 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 INPP4AQ96PE3 977 aaPredicted RBP11.83□□□□□ -0.52
USP54-204ENST00000422491 KRT12Q99456 494 aa11.83□□□□□ -0.52
USP54-204ENST00000422491 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.83□□□□□ -0.52
USP54-204ENST00000422491 LRRC53A6NM62 1247 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 MGRN1O60291 552 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 SSBP05455 408 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP54-204ENST00000422491 PAEPP09466 180 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 EZRP15311 586 aaKnown RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 VEGFAP15692 232 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 IBSPP21815 317 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 SLC1A4P43007 532 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 RASSF7Q02833 373 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 GFPT1Q06210 699 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 MIGA1Q8NAN2 632 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 BAP1Q92560 729 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 FAM207AQ9NSI2 230 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 DUOX1Q9NRD9 1551 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 GCOM1H8Y6P7 765 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 PPP1R12AO14974 1030 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 RAD51CO43502 376 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 MYZAPP0CAP1 466 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 CALM1P0DP23 149 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 CALM2P0DP24 149 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 CALM3P0DP25 149 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 CSB-PGBD3P0DP91 1061 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 SCG2P13521 617 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 HSD17B3P37058 310 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 STK4Q13043 487 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 UAP1Q16222 522 aaPredicted RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 EIF1ADQ8N9N8 165 aaKnown RBP11.82□□□□□ -0.52
USP54-204ENST00000422491 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP54-204ENST00000422491 SCLT1Q96NL6 688 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 CCSER1Q9C0I3 900 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 DLEC1Q9Y238 1755 aa11.82□□□□□ -0.52
USP54-204ENST00000422491 GOLGA6L10A6NI86 522 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 MINDY4BA8MYZ0 360 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 RBAK-RBAKDNI3L0D1 243 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 OPLAHO14841 1288 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 DDAH1O94760 285 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 ERCC3P19447 782 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 SLC8A1P32418 973 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 ZNF844Q08AG5 666 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms