RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 ST3GAL1Q11201 340 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 HEATR3Q7Z4Q2 680 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 ANKLE1Q8NAG6 615 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 UPF2Q9HAU5 1272 aaKnown RBP21.5■■□□□ 1.03
PTCD3-204ENST00000418628 VTA1Q9NP79 307 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 PXMP2Q9NR77 195 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 SCN10AQ9Y5Y9 1956 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 RBM47A0AV96 593 aaKnown RBP21.49■■□□□ 1.03
PTCD3-204ENST00000418628 AKR1A1P14550 325 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 RABEP1Q15276 862 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 TAPT1Q6NXT6 567 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 FBXO16Q8IX29 292 aaPredicted RBP21.49■■□□□ 1.03
PTCD3-204ENST00000418628 NSUN6Q8TEA1 469 aaKnown RBP21.49■■□□□ 1.03
PTCD3-204ENST00000418628 GTF3C6Q969F1 213 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 IWS1Q96ST2 819 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 RMDN3Q96TC7 470 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 STK36Q9NRP7 1315 aa21.49■■□□□ 1.03
PTCD3-204ENST00000418628 ESYT2A0FGR8 921 aa21.48■■□□□ 1.03
PTCD3-204ENST00000418628 STK3Q13188 491 aa21.48■■□□□ 1.03
PTCD3-204ENST00000418628 IL27Q8NEV9 243 aa21.48■■□□□ 1.03
PTCD3-204ENST00000418628 PDCD2LQ9BRP1 358 aa21.48■■□□□ 1.03
PTCD3-204ENST00000418628 SLKQ9H2G2 1235 aaPredicted RBP21.48■■□□□ 1.03
PTCD3-204ENST00000418628 ZHX1Q9UKY1 873 aaPredicted RBP21.48■■□□□ 1.03
PTCD3-204ENST00000418628 CEP290O15078 2479 aa21.48■■□□□ 1.03
PTCD3-204ENST00000418628 CTDNEP1O95476 244 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 CNGA1P29973 690 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 NKX3-2P78367 333 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 CCDC144BQ3MJ40 725 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 USP17L6PQ6QN14 398 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 IL31RAQ8NI17 732 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 PSTPIP2Q9H939 334 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 RIC8AQ9NPQ8 531 aa21.47■■□□□ 1.03
PTCD3-204ENST00000418628 ADAMTS4O75173 837 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 CLK2P49760 499 aaKnown RBP21.46■■□□□ 1.03
PTCD3-204ENST00000418628 NAPAP54920 295 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 PGM5Q15124 567 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 LENG1Q96BZ8 264 aaPredicted RBP21.46■■□□□ 1.03
PTCD3-204ENST00000418628 MPHOSPH6Q99547 160 aaKnown RBP21.46■■□□□ 1.03
PTCD3-204ENST00000418628 SLC26A6Q9BXS9 759 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 ZMYND12Q9H0C1 365 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 UPF3AQ9H1J1 476 aaKnown RBP21.46■■□□□ 1.03
PTCD3-204ENST00000418628 FAM184BQ9ULE4 1060 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 GNEQ9Y223 722 aaKnown RBP21.46■■□□□ 1.03
PTCD3-204ENST00000418628 DNAH12Q6ZR08 3092 aa21.46■■□□□ 1.03
PTCD3-204ENST00000418628 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.45■■□□□ 1.02
PTCD3-204ENST00000418628 B4DLN1 442 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 CPLX1O14810 134 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 DUSP11O75319 330 aaKnown RBP21.45■■□□□ 1.02
PTCD3-204ENST00000418628 NR3C2P08235 984 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 EIF2AK2P19525 551 aaKnown RBP21.45■■□□□ 1.02
PTCD3-204ENST00000418628 MRPL12P52815 198 aaKnown RBP21.45■■□□□ 1.02
PTCD3-204ENST00000418628 PDE4DQ08499 809 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 CUL5Q93034 780 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 PDGFCQ9NRA1 345 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 SYNRGQ9UMZ2 1314 aa21.45■■□□□ 1.02
PTCD3-204ENST00000418628 PPFIA3O75145 1194 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 FARP2O94887 1054 aaPredicted RBP21.44■■□□□ 1.02
PTCD3-204ENST00000418628 DEXIO95424 95 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 TFRCP02786 760 aaKnown RBP21.44■■□□□ 1.02
PTCD3-204ENST00000418628 RARBP10826 455 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 COL6A1P12109 1028 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 ADCYAP1R1P41586 468 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 ARHGEF16Q5VV41 709 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 ANO1Q5XXA6 986 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 CPLX2Q6PUV4 134 aaKnown RBP21.44■■□□□ 1.02
PTCD3-204ENST00000418628 NOL8Q76FK4 1167 aaKnown RBP21.44■■□□□ 1.02
PTCD3-204ENST00000418628 EEPD1Q7L9B9 569 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 VSIG10LQ86VR7 867 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 TRIM22Q8IYM9 498 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 FAM177A1Q8N128 213 aaPredicted RBP21.44■■□□□ 1.02
PTCD3-204ENST00000418628 SH3GLB2Q9NR46 395 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 LIMCH1Q9UPQ0 1083 aa21.44■■□□□ 1.02
PTCD3-204ENST00000418628 CTAGE5O15320 804 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 CDKL5O76039 1030 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 RGS20O76081 388 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 CST5P28325 142 aaPredicted RBP21.43■■□□□ 1.02
PTCD3-204ENST00000418628 ADCY7P51828 1080 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 SSRP1Q08945 709 aaKnown RBP21.43■■□□□ 1.02
PTCD3-204ENST00000418628 UBE2SQ16763 222 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 IQSEC1Q6DN90 963 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 FCHSD1Q86WN1 690 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 NECAB1Q8N987 351 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 NSUN7Q8NE18 718 aaKnown RBP21.43■■□□□ 1.02
PTCD3-204ENST00000418628 SMARCC2Q8TAQ2 1214 aa21.43■■□□□ 1.02
PTCD3-204ENST00000418628 DIS3LQ8TF46 1054 aaKnown RBP21.43■■□□□ 1.02
PTCD3-204ENST00000418628 SMCO2A6NFE2 343 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 DNM1LO00429 736 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 SMPD1P17405 629 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 GJA9P57773 515 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 AKAP17AQ02040 695 aaKnown RBP21.42■■□□□ 1.02
PTCD3-204ENST00000418628 STXBP2Q15833 593 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 DUSP28Q4G0W2 176 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 TMEM63BQ5T3F8 832 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 CCSAPQ6IQ19 270 aaPredicted RBP21.42■■□□□ 1.02
PTCD3-204ENST00000418628 KLHDC9Q8NEP7 349 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 CCDC12Q8WUD4 166 aaPredicted RBP21.42■■□□□ 1.02
PTCD3-204ENST00000418628 GLT8D2Q9H1C3 349 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 XPNPEP3Q9NQH7 507 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 Q9Y3F1 56 aa21.42■■□□□ 1.02
PTCD3-204ENST00000418628 LTBP2Q14767 1821 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms