RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 STK17AQ9UEE5 414 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 NRAPQ86VF7 1730 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 ESYT2A0FGR8 921 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 hCG_1984214I3L0E3 225 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 TACC1O75410 805 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 IDEP14735 1019 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 MAGEA9P43362 315 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 ASIC1P78348 528 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 VWA3BQ502W6 1294 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 TBC1D9BQ66K14 1250 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 BARGINQ6ZT62 677 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 SV2BQ7L1I2 683 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 ZNF713Q8N859 430 aaPredicted RBP10.89□□□□□ -0.67
CD44-206ENST00000415148 PCMTD1Q96MG8 357 aaPredicted RBP10.89□□□□□ -0.67
CD44-206ENST00000415148 LRRC27Q9C0I9 530 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 SNX12Q9UMY4 172 aa10.89□□□□□ -0.67
CD44-206ENST00000415148 A0A0G2JS52 829 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 USP17L3A6NCW0 530 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 USP17L4A6NCW7 530 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 SMCO2A6NFE2 343 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 CCNT1O60563 726 aaKnown RBP10.88□□□□□ -0.67
CD44-206ENST00000415148 NAPAP54920 295 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 PSMD2Q13200 908 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 USP17L1Q7RTZ2 530 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 CAGE1Q8TC20 777 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 HPS3Q969F9 1004 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 DYNLL2Q96FJ2 89 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 DRC1Q96MC2 740 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 SETDB2Q96T68 719 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 PSMB7Q99436 277 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 NARFQ9UHQ1 456 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 DMGDHQ9UI17 866 aaKnown RBP10.88□□□□□ -0.67
CD44-206ENST00000415148 LEMD3Q9Y2U8 911 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 COL24A1Q17RW2 1714 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 AHDC1Q5TGY3 1603 aaPredicted RBP10.88□□□□□ -0.67
CD44-206ENST00000415148 RASA1P20936 1047 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 SLC7A5Q01650 507 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 LRRC63Q05C16 580 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 PDE4CQ08493 712 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 PDIA5Q14554 519 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 RC3H1Q5TC82 1133 aaKnown RBP10.88□□□□□ -0.67
CD44-206ENST00000415148 SOGA3Q5TF21 947 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 TPTE2Q6XPS3 522 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 UNC13DQ70J99 1090 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 GUF1Q8N442 669 aaKnown RBP10.88□□□□□ -0.67
CD44-206ENST00000415148 CCDC155Q8N6L0 562 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 LINC00116Q8NCU8 138 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 SH3RF3Q8TEJ3 882 aaPredicted RBP10.88□□□□□ -0.67
CD44-206ENST00000415148 SEMA6BQ9H3T3 888 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 SH2D4AQ9H788 454 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 MLXIPQ9HAP2 919 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 JADE2Q9NQC1 790 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 SIK3Q9Y2K2 1263 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 PCDHA13Q9Y5I0 950 aa10.88□□□□□ -0.67
CD44-206ENST00000415148 EPHB6O15197 1021 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 PJA2O43164 708 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 PPFIA4O75335 1185 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 TCP1P17987 556 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 TECP42680 631 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 FXR2P51116 673 aaKnown RBP eCLIP10.87□□□□□ -0.67
CD44-206ENST00000415148 SF3B2Q13435 895 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 MAN2A1Q16706 1144 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 KCTD19Q17RG1 926 aaPredicted RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 LETM2Q2VYF4 491 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 CREG2Q8IUH2 290 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 KAT2BQ92831 832 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 MTMR9Q96QG7 549 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 CRACR2AQ9BSW2 395 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 MMTAG2Q9BU76 263 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 NDST4Q9H3R1 872 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 FAM184BQ9ULE4 1060 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 CAPN6Q9Y6Q1 641 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 NAV1Q8NEY1 1877 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 FCER1AP12319 257 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 TM4SF1P30408 202 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 CXCR5P32302 372 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 NOVP48745 357 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 TTC31Q49AM3 519 aaPredicted RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 C15orf52Q6ZUT6 534 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 TSEN2Q8NCE0 465 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 KIAA0895Q8NCT3 520 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 NEDD1Q8NHV4 660 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 LRRC1Q9BTT6 524 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 IFIH1Q9BYX4 1025 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 RAB34Q9BZG1 259 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 NUCKS1Q9H1E3 243 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 RIC8AQ9NPQ8 531 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 RNF14Q9UBS8 474 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 LRWD1Q9UFC0 647 aa10.87□□□□□ -0.67
CD44-206ENST00000415148 SEC63Q9UGP8 760 aaKnown RBP10.87□□□□□ -0.67
CD44-206ENST00000415148 SPATA31A5Q5VU36 1347 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 SPATA31A7Q8IWB4 1347 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 ERCC3P19447 782 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 MATR3P43243 847 aaKnown RBP eCLIP10.86□□□□□ -0.67
CD44-206ENST00000415148 CCT5P48643 541 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 CCDC96Q2M329 555 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 DNAJC21Q5F1R6 531 aaKnown RBP10.86□□□□□ -0.67
CD44-206ENST00000415148 BICDL1Q6ZP65 573 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 C16orf86Q6ZW13 317 aa10.86□□□□□ -0.67
CD44-206ENST00000415148 TXNRD3Q86VQ6 643 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms