RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 TRIM60Q495X7 471 aa17.16■□□□□ 0.34
LIMS4-201ENST00000413601 SYNE3Q6ZMZ3 975 aa17.16■□□□□ 0.34
LIMS4-201ENST00000413601 MICU3Q86XE3 530 aa17.16■□□□□ 0.34
LIMS4-201ENST00000413601 PCSK9Q8NBP7 692 aaKnown RBP17.16■□□□□ 0.34
LIMS4-201ENST00000413601 RRP36Q96EU6 259 aaKnown RBP17.16■□□□□ 0.34
LIMS4-201ENST00000413601 JAKMIP1Q96N16 626 aaKnown RBP17.16■□□□□ 0.34
LIMS4-201ENST00000413601 WDR11Q9BZH6 1224 aa17.16■□□□□ 0.34
LIMS4-201ENST00000413601 AP5M1Q9H0R1 490 aa17.16■□□□□ 0.34
LIMS4-201ENST00000413601 RBM27Q9P2N5 1060 aaKnown RBP17.16■□□□□ 0.34
LIMS4-201ENST00000413601 BRPF3Q9ULD4 1205 aa17.16■□□□□ 0.34
LIMS4-201ENST00000413601 RBM47A0AV96 593 aaKnown RBP17.15■□□□□ 0.34
LIMS4-201ENST00000413601 HOXA13P31271 388 aaPredicted RBP17.15■□□□□ 0.34
LIMS4-201ENST00000413601 NKX3-2P78367 333 aa17.15■□□□□ 0.34
LIMS4-201ENST00000413601 DUSP28Q4G0W2 176 aa17.15■□□□□ 0.34
LIMS4-201ENST00000413601 ARHGEF16Q5VV41 709 aa17.15■□□□□ 0.34
LIMS4-201ENST00000413601 APOA5Q6Q788 366 aa17.15■□□□□ 0.34
LIMS4-201ENST00000413601 CCDC82Q8N4S0 544 aa17.15■□□□□ 0.34
LIMS4-201ENST00000413601 STARD7Q9NQZ5 370 aa17.15■□□□□ 0.34
LIMS4-201ENST00000413601 EIF2AK2P19525 551 aaKnown RBP17.14■□□□□ 0.33
LIMS4-201ENST00000413601 GHRHRQ02643 423 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 FSCN1Q16658 493 aaKnown RBP17.14■□□□□ 0.33
LIMS4-201ENST00000413601 C1orf53Q5VUE5 145 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 VTI1AQ96AJ9 217 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 IWS1Q96ST2 819 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 PRO3102Q9H379 93 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 PXMP2Q9NR77 195 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 MAP3K20Q9NYL2 800 aaKnown RBP17.14■□□□□ 0.33
LIMS4-201ENST00000413601 SEC63Q9UGP8 760 aaKnown RBP17.14■□□□□ 0.33
LIMS4-201ENST00000413601 Q9Y3F1 56 aa17.14■□□□□ 0.33
LIMS4-201ENST00000413601 hCG_1642624A0A1W2PR95 340 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 GCOM1H8Y6P7 765 aaPredicted RBP17.13■□□□□ 0.33
LIMS4-201ENST00000413601 POLR2MP0CAP2 368 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 MAGEA10P43363 369 aaPredicted RBP17.13■□□□□ 0.33
LIMS4-201ENST00000413601 FGD1P98174 961 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 TLE2Q04725 743 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 STXBP2Q15833 593 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 BLOC1S2Q6QNY1 142 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 TMTC3Q6ZXV5 915 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 SAMD3Q8N6K7 520 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 SCFD2Q8WU76 684 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 GLT1D1Q96MS3 346 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 GDF15Q99988 308 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 USP26Q9BXU7 913 aa17.13■□□□□ 0.33
LIMS4-201ENST00000413601 DOCK5Q9H7D0 1870 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 KLF18A0A0U1RQI7 1052 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 ZBTB43O43298 467 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 NR3C2P08235 984 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 MDM2Q00987 491 aaPredicted RBP17.12■□□□□ 0.33
LIMS4-201ENST00000413601 PPP2R5BQ15173 497 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 CXCL17Q6UXB2 119 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 SEPT14Q6ZU15 432 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 Q6ZUG5 572 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 FCHSD1Q86WN1 690 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 COPS5Q92905 334 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 PRDM5Q9NQX1 630 aaPredicted RBP17.12■□□□□ 0.33
LIMS4-201ENST00000413601 PRKAG2Q9UGJ0 569 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 NAP1L2Q9ULW6 460 aaPredicted RBP17.12■□□□□ 0.33
LIMS4-201ENST00000413601 ELP1O95163 1332 aa17.12■□□□□ 0.33
LIMS4-201ENST00000413601 EPB41L2O43491 1005 aaKnown RBP17.11■□□□□ 0.33
LIMS4-201ENST00000413601 PQBP1O60828 265 aaKnown RBP17.11■□□□□ 0.33
LIMS4-201ENST00000413601 ARIH2O95376 493 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 TXNP10599 105 aaKnown RBP17.11■□□□□ 0.33
LIMS4-201ENST00000413601 MYCLP12524 364 aaPredicted RBP17.11■□□□□ 0.33
LIMS4-201ENST00000413601 CASTP20810 708 aaKnown RBP17.11■□□□□ 0.33
LIMS4-201ENST00000413601 APOBRQ0VD83 1088 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 TTLL4Q14679 1199 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 RTN1Q16799 776 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 SH3RF1Q7Z6J0 888 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 OR6J1Q8NGC5 347 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 PDCD2LQ9BRP1 358 aa17.11■□□□□ 0.33
LIMS4-201ENST00000413601 RBM28Q9NW13 759 aaKnown RBP17.11■□□□□ 0.33
LIMS4-201ENST00000413601 A0A0U1RQG5 324 aaPredicted RBP17.1■□□□□ 0.33
LIMS4-201ENST00000413601 GOLGA8AA7E2F4 631 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 GOLGA8BA8MQT2 603 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 NKRFO15226 690 aaKnown RBP eCLIP17.1■□□□□ 0.33
LIMS4-201ENST00000413601 ZEB2O60315 1214 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 EIF3JO75822 258 aaKnown RBP17.1■□□□□ 0.33
LIMS4-201ENST00000413601 RPS6KB1P23443 525 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 PSMA5P28066 241 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 PGM5Q15124 567 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 CCDC62Q6P9F0 684 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 IL31RAQ8NI17 732 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 BRF1Q92994 677 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 PDLIM7Q9NR12 457 aa17.1■□□□□ 0.33
LIMS4-201ENST00000413601 RNF216Q9NWF9 866 aaPredicted RBP17.1■□□□□ 0.33
LIMS4-201ENST00000413601 TRIM43BA6NCK2 446 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 BMP8BP34820 402 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 CDK7P50613 346 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 LY6KQ17RY6 165 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 USP17L6PQ6QN14 398 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 ANKRD33Q7Z3H0 272 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 TRIM43Q96BQ3 446 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-201ENST00000413601 ZFP91Q96JP5 570 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-201ENST00000413601 LBHD1Q9BQE6 289 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-201ENST00000413601 FAM217BQ9NTX9 383 aaPredicted RBP17.09■□□□□ 0.33
LIMS4-201ENST00000413601 CNTNAP5Q8WYK1 1306 aa17.09■□□□□ 0.33
LIMS4-201ENST00000413601 TRIOBPQ9H2D6 2365 aa17.08■□□□□ 0.33
LIMS4-201ENST00000413601 DCDC2CA8MYV0 355 aa17.08■□□□□ 0.32
LIMS4-201ENST00000413601 ARVCFO00192 962 aa17.08■□□□□ 0.32
LIMS4-201ENST00000413601 CABYRO75952 493 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms