RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 NUP62CLQ9H1M0 184 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 CLSTN2Q9H4D0 955 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 GPBP1L1Q9HC44 474 aaPredicted RBP7.55□□□□□ -1.2
VPS41-204ENST00000413141 HOMER2Q9NSB8 354 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 RNF146Q9NTX7 359 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 HOXC10Q9NYD6 342 aa7.55□□□□□ -1.2
VPS41-204ENST00000413141 RPTORQ8N122 1335 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 LCTP09848 1927 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 CYP3A7-CYP3A51PA0A087WV96 503 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 SYCE3A1L190 88 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 KIF3CO14782 793 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 KINO60870 393 aaKnown RBP7.54□□□□□ -1.2
VPS41-204ENST00000413141 CNMDO75829 334 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 CYP3A4P08684 503 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 CETPP11597 493 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 OSBPP22059 807 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 CYP3A7P24462 503 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 LONP1P36776 959 aaKnown RBP7.54□□□□□ -1.2
VPS41-204ENST00000413141 USP11P51784 963 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 HUNKP57058 714 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 ZNF445P59923 1031 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 HERVK_113P62684 666 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 CALCRLQ16602 461 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 TKFCQ3LXA3 575 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 SPECC1Q5M775 1068 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 SPRYD7Q5W111 196 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 DTHD1Q6ZMT9 781 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 FCHSD1Q86WN1 690 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 RASAL3Q86YV0 1011 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 SAMD3Q8N6K7 520 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 SYTL5Q8TDW5 730 aaPredicted RBP7.54□□□□□ -1.2
VPS41-204ENST00000413141 SYMPKQ92797 1274 aaKnown RBP7.54□□□□□ -1.2
VPS41-204ENST00000413141 MS4A4AQ96JQ5 239 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 MTMR9Q96QG7 549 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 ACAD9Q9H845 621 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 EHMT1Q9H9B1 1298 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 FAM13BQ9NYF5 915 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 MAP3K20Q9NYL2 800 aaKnown RBP7.54□□□□□ -1.2
VPS41-204ENST00000413141 BTBD7Q9P203 1132 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 COL20A1Q9P218 1284 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 DDX25Q9UHL0 483 aaKnown RBP7.54□□□□□ -1.2
VPS41-204ENST00000413141 SLC45A1Q9Y2W3 748 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 RIPK3Q9Y572 518 aa7.54□□□□□ -1.2
VPS41-204ENST00000413141 LRRC37A2A6NM11 1700 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 CCL15-CCL14A0A0B4J2E2 113 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 FAM86B1E9PN63 330 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 FAM86B2P0C5J1 330 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 CIITAP33076 1130 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 STAT3P40763 770 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 SYKP43405 635 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 RPS6P62753 249 aaKnown RBP7.53□□□□□ -1.2
VPS41-204ENST00000413141 MKRN3Q13064 507 aaKnown RBP7.53□□□□□ -1.2
VPS41-204ENST00000413141 PLS1Q14651 629 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 GSE1Q14687 1217 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 CCL15Q16663 113 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 Q4G0T1 1027 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 NSMFQ6X4W1 530 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 RNF207Q6ZRF8 634 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 RBM43Q6ZSC3 357 aaKnown RBP7.53□□□□□ -1.2
VPS41-204ENST00000413141 USP49Q70CQ1 688 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 ANKRD23Q86SG2 305 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 SAPCD2Q86UD0 394 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 RIOX2Q8IUF8 465 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 SMC1BQ8NDV3 1235 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 CHST13Q8NET6 341 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 BRI3BPQ8WY22 251 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 HAS1Q92839 578 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 LENG9Q96B70 501 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 EPSTI1Q96J88 318 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 MAF1Q9H063 256 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 SPATC1LQ9H0A9 340 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 TNMDQ9H2S6 317 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 TXNRD2Q9NNW7 524 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 KCNMB3Q9NPA1 279 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 PNMA3Q9UL41 463 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 KCNH3Q9ULD8 1083 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 RABGAP1Q9Y3P9 1069 aa7.53□□□□□ -1.2
VPS41-204ENST00000413141 IGLV3-22A0A075B6J6 115 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 A0A087X0B3 334 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 BTBD19C9JJ37 291 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 PDHXO00330 501 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 TBX3O15119 743 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 PEX10O60683 326 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 ZNF202O95125 648 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 LETM1O95202 739 aaPredicted RBP7.52□□□□□ -1.21
VPS41-204ENST00000413141 CYP2C8P10632 490 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 TXLNAP40222 546 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 UBXN2AP68543 259 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 SETQ01105 290 aaPredicted RBP7.52□□□□□ -1.21
VPS41-204ENST00000413141 BAATQ14032 418 aaPredicted RBP7.52□□□□□ -1.21
VPS41-204ENST00000413141 CAMK4Q16566 473 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 TMEM266Q2M3C6 531 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 PRR16Q569H4 304 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 LRSAM1Q6UWE0 723 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 IGSF22Q8N9C0 903 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 IL31RAQ8NI17 732 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 ETNPPLQ8TBG4 499 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 GTF3C2Q8WUA4 911 aaPredicted RBP7.52□□□□□ -1.21
VPS41-204ENST00000413141 AK8Q96MA6 479 aa7.52□□□□□ -1.21
VPS41-204ENST00000413141 TIGD1Q96MW7 591 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms