RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 NRAPQ86VF7 1730 aa8.47□□□□□ -1.05
USP40-202ENST00000409945 HSPA5P11021 654 aaKnown RBP8.46□□□□□ -1.05
USP40-202ENST00000409945 CD247P20963 164 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 ZNF445P59923 1031 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 NBPF9Q3BBW0 867 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 HEATR6Q6AI08 1181 aaKnown RBP8.46□□□□□ -1.05
USP40-202ENST00000409945 ZAR1Q86SH2 424 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 NME9Q86XW9 330 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 TCP11L2Q8N4U5 519 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 GP6Q9HCN6 339 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 SPATA31A1Q5TZJ5 1347 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 GLI3P10071 1580 aa8.46□□□□□ -1.05
USP40-202ENST00000409945 PPP1R12AO14974 1030 aaPredicted RBP8.46□□□□□ -1.06
USP40-202ENST00000409945 CBX7O95931 251 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 CHMP4BP1P59074 171 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 PAOXQ6QHF9 649 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 PRR23CQ6ZRP0 262 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 ARHGEF25Q86VW2 580 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 CLEC10AQ8IUN9 316 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 PPP1R14AQ96A00 147 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 EXOC2Q96KP1 924 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 YIPF2Q9BWQ6 316 aa8.46□□□□□ -1.06
USP40-202ENST00000409945 ANKRD34BA5PLL1 514 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 ENPP3O14638 875 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 CAPNS1P04632 268 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 F13BP05160 661 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 L1CAMP32004 1257 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 GATA4P43694 442 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 CBX2Q14781 532 aaPredicted RBP8.45□□□□□ -1.06
USP40-202ENST00000409945 C21orf62-AS1Q17RA5 79 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 GPAT2Q6NUI2 795 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 ALYREFQ86V81 257 aaKnown RBP8.45□□□□□ -1.06
USP40-202ENST00000409945 ZNF227Q86WZ6 799 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 C7orf61Q8IZ16 206 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 DTWD2Q8NBA8 298 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 RNF141Q8WVD5 230 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 SPATA9Q9BWV2 254 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 TMEM260Q9NX78 707 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 CRB1P82279 1406 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 CD163L1Q9NR16 1453 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 ABCC6O95255 1503 aa8.45□□□□□ -1.06
USP40-202ENST00000409945 PPP2R2AP63151 447 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 CGNL1Q0VF96 1302 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 BBS9Q3SYG4 887 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 LRRN4CLQ8ND94 238 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 FBXL18Q96ME1 805 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 GFOD1Q9NXC2 390 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 STOML1Q9UBI4 398 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 COL5A2P05997 1499 aaPredicted RBP8.44□□□□□ -1.06
USP40-202ENST00000409945 WDR17Q8IZU2 1322 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 MEIS1O00470 390 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 AMPHP49418 695 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 TNK2Q07912 1038 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 RAXQ9Y2V3 346 aa8.44□□□□□ -1.06
USP40-202ENST00000409945 LMO7Q8WWI1 1683 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 CAMTA1Q9Y6Y1 1673 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 CYP4F3Q08477 520 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 DOC2BQ14184 412 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 FAM209AQ5JX71 171 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 OGFOD3Q6PK18 319 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 ADAT2Q7Z6V5 191 aaKnown RBP8.43□□□□□ -1.06
USP40-202ENST00000409945 THAP3Q8WTV1 239 aaPredicted RBP8.43□□□□□ -1.06
USP40-202ENST00000409945 NOL6Q9H6R4 1146 aaKnown RBP8.43□□□□□ -1.06
USP40-202ENST00000409945 PRDM5Q9NQX1 630 aaPredicted RBP8.43□□□□□ -1.06
USP40-202ENST00000409945 USP54Q70EL1 1684 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 SMG6Q86US8 1419 aaKnown RBP8.43□□□□□ -1.06
USP40-202ENST00000409945 CCDC7Q96M83 1385 aa8.43□□□□□ -1.06
USP40-202ENST00000409945 CTSKP43235 329 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 PPP2R5DQ14738 602 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 MCMBPQ9BTE3 642 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 STK17AQ9UEE5 414 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 OVOS2A0A0J9YW53 1432 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 BLMP54132 1417 aaPredicted RBP8.42□□□□□ -1.06
USP40-202ENST00000409945 OVOS2Q6IE36 1432 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 CDC45O75419 566 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 PRAMEF1O95521 474 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 ETV3P41162 512 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 DDB1Q16531 1140 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 ANKRD39Q53RE8 183 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 ZBTB38Q8NAP3 1195 aaPredicted RBP8.42□□□□□ -1.06
USP40-202ENST00000409945 GPATCH3Q96I76 525 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 ASPNQ9BXN1 380 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 CGGBP1Q9UFW8 167 aaPredicted RBP8.42□□□□□ -1.06
USP40-202ENST00000409945 NFAT5O94916 1531 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 NSD3Q9BZ95 1437 aa8.42□□□□□ -1.06
USP40-202ENST00000409945 FYB1O15117 783 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 PROCP04070 461 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 HSD3B2P26439 372 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 KCNMA1Q12791 1236 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 BTN2A2Q8WVV5 523 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 IP6K1Q92551 441 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 MRGPRX3Q96LB0 322 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 FBXL21Q9UKT6 434 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 KNSTRNQ9Y448 316 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 CD2APQ9Y5K6 639 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 RTL1A6NKG5 1358 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 LTN1O94822 1766 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 H0Y8X5 98 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 EXOC5O00471 708 aa8.41□□□□□ -1.06
USP40-202ENST00000409945 NKPD1Q17RQ9 610 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms