RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 H7C1D1 291 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 STAT2P52630 851 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 EIF6P56537 245 aaKnown RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ZNF445P59923 1031 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ADCY2Q08462 1091 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 PCGF5Q86SE9 256 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 GPBP1Q86WP2 473 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 GPBP1L1Q9HC44 474 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 SELENONQ9NZV5 590 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ADAMTS2O95450 1211 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ABCB4P21439 1286 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 MRPS15P82914 257 aaKnown RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 WASHC5Q12768 1159 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 MMS22LQ6ZRQ5 1243 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ACAD11Q709F0 780 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 WAPLQ7Z5K2 1190 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 DZIP3Q86Y13 1208 aaKnown RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 SBNO2Q9Y2G9 1366 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 FRMD3A2A2Y4 597 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 DEAF1O75398 565 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ECEL1O95672 775 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 SLC12A1Q13621 1099 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 ARHGEF6Q15052 776 aa8.52□□□□□ -1.05
SYNE1-210ENST00000409694 MYLK4Q86YV6 388 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-210ENST00000409694 SSH2Q76I76 1423 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 GOLGA8IPA6NC78 632 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 SPOPLQ6IQ16 392 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 NDEL1Q9GZM8 345 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MRPL47Q9HD33 250 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 PANK4Q9NVE7 773 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 TRPM2O94759 1503 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ABL1P00519 1130 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 FAM133BQ5BKY9 247 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ADGBQ8N7X0 1667 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 PLCH2O75038 1416 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MAGI1Q96QZ7 1491 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 SYCP2Q9BX26 1530 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 H0Y626 953 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MBD4O95243 580 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 TRIM16O95361 564 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MYL7Q01449 175 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 LRMPQ12912 555 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ZC3H18Q86VM9 953 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 RRP15Q9Y3B9 282 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MMEP08473 750 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 CA4P22748 312 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ARL4AP40617 200 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 KIAA2013Q8IYS2 634 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 TBC1D22AQ8WUA7 517 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 GLG1Q92896 1179 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 STMN3Q9NZ72 180 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ARPP21Q9UBL0 812 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 STRIP2Q9ULQ0 834 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 SETD1BQ9UPS6 1966 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ANXA13P27216 316 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 TTLL7Q6ZT98 887 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 RETREG2Q8NC44 543 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ICA1LQ8NDH6 482 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MCUQ8NE86 351 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 C19orf60Q96EN9 201 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ATP8A2Q9NTI2 1148 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 NFKBIL1Q9UBC1 381 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 ARAP1Q96P48 1450 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 A0A087WUV0 522 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 DDX39AO00148 427 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 SCG2P13521 617 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 TRPC1P48995 793 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 PARP10Q53GL7 1025 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 C20orf194Q5TEA3 1177 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 VPS39Q96JC1 886 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 TBC1D7Q9P0N9 293 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 PRG3Q9Y2Y8 225 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MAP3K1Q13233 1512 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MYSM1Q5VVJ2 828 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MROH5Q6ZUA9 1318 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 RUSC2Q8N2Y8 1516 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 DNAAF3Q8N9W5 541 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 WARS2Q9UGM6 360 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 COL4A3BPQ9Y5P4 624 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 PHLPP2Q6ZVD8 1323 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 DAB1O75553 588 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 KRT16P08779 473 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 DAB2P98082 770 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 CADPS2Q86UW7 1296 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 SCG3Q8WXD2 468 aaKnown RBP8.51□□□□□ -1.05
SYNE1-210ENST00000409694 MAML1Q92585 1016 aa8.51□□□□□ -1.05
SYNE1-210ENST00000409694 POC1B-GALNT4F8VUJ3 575 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 IRS4O14654 1257 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 ESRRBO95718 433 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 ESRRAP11474 423 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 TFAP4Q01664 338 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 TPH2Q8IWU9 490 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 RYBPQ8N488 228 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 ZNF713Q8N859 430 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 LINS1Q8NG48 757 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 DIS3Q9Y2L1 958 aaKnown RBP8.5□□□□□ -1.05
SYNE1-210ENST00000409694 PTPN22Q9Y2R2 807 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 SYNJ1O43426 1573 aa8.5□□□□□ -1.05
SYNE1-210ENST00000409694 TOM1L1O75674 476 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms