RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ATP1A1P05023 1023 aaKnown RBP14.93□□□□□ -0.02
VPS54-203ENST00000409558 OAS2P29728 719 aaKnown RBP14.93□□□□□ -0.02
VPS54-203ENST00000409558 ECM1Q16610 540 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 LARP4BQ92615 738 aaKnown RBP14.93□□□□□ -0.02
VPS54-203ENST00000409558 CCDC42Q96M95 316 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 ZMYND12Q9H0C1 365 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 RCCD1A6NED2 376 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 HERC4Q5GLZ8 1057 aaPredicted RBP14.93□□□□□ -0.02
VPS54-203ENST00000409558 CDC42EP5Q6NZY7 148 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 KIAA0895Q8NCT3 520 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 DUSP9Q99956 384 aaKnown RBP14.93□□□□□ -0.02
VPS54-203ENST00000409558 JMJD4Q9H9V9 463 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 PCDHA12Q9UN75 941 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 CTAGE15A4D2H0 777 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 TCP10L2B9ZVM9 353 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 CTAGE8P0CG41 777 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 PLCG2P16885 1265 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 CTAGE6Q86UF2 777 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 CTAGE4Q8IX94 777 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 SH2D3AQ9BRG2 576 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 MLXIPQ9HAP2 919 aa14.93□□□□□ -0.02
VPS54-203ENST00000409558 ANKRD36CQ5JPF3 1778 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 PPP1R11O60927 126 aaPredicted RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 HLA-DOAP06340 250 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 H2AFXP16104 143 aaPredicted RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 ZNF76P36508 570 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 PLA2G4AP47712 749 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 PABPC4Q13310 644 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS54-203ENST00000409558 TMED8Q6PL24 325 aaPredicted RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 JAKMIP2Q96AA8 810 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 MMTAG2Q9BU76 263 aaKnown RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 DDTLA6NHG4 134 aaPredicted RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 N4BP1O75113 896 aaKnown RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 EPS15P42566 896 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 SEMA6BQ9H3T3 888 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 LIMA1Q9UHB6 759 aaKnown RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 PRDM4Q9UKN5 801 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 MORC2Q9Y6X9 1032 aaPredicted RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 DDX60Q8IY21 1712 aaKnown RBP14.92□□□□□ -0.02
VPS54-203ENST00000409558 IKZF4Q9H2S9 585 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 NHSL1Q5SYE7 1610 aa14.92□□□□□ -0.02
VPS54-203ENST00000409558 POTEFA5A3E0 1075 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 POTEIP0CG38 1075 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 EEF2P13639 858 aaKnown RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 PPP4CP60510 307 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 GRB10Q13322 594 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 POTEGQ6S5H5 508 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 POTEEQ6S8J3 1075 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 SLF2Q8IX21 1173 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 CDC23Q9UJX2 597 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 LGALS16A8MUM7 142 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 DDX39AO00148 427 aaKnown RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 BBOX1O75936 387 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 TTLL1O95922 423 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 TTI2Q6NXR4 508 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 CC2D1AQ6P1N0 951 aaPredicted RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 CCDC174Q6PII3 467 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 TEKT1Q969V4 418 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 NHEJ1Q9H9Q4 299 aaPredicted RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 VEZTQ9HBM0 779 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 PDE11AQ9HCR9 933 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 NID2Q14112 1375 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 NCK2O43639 380 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 AMPD3Q01432 767 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 LONRF2Q1L5Z9 754 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 MIGA2Q7L4E1 593 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 CYP2W1Q8TAV3 490 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 ABCB6Q9NP58 842 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 KBTBD4Q9NVX7 518 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 REXO2Q9Y3B8 237 aaKnown RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 LMAN1P49257 510 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 SMC1AQ14683 1233 aaKnown RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 SPA17Q15506 151 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 PROCA1Q8NCQ7 364 aaPredicted RBP14.91□□□□□ -0.02
VPS54-203ENST00000409558 VPS18Q9P253 973 aa14.91□□□□□ -0.02
VPS54-203ENST00000409558 PBX1P40424 430 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 VSNL1P62760 191 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 SRGAP1Q7Z6B7 1085 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 FNBP4Q8N3X1 1017 aaPredicted RBP14.9□□□□□ -0.02
VPS54-203ENST00000409558 GIMAP8Q8ND71 665 aaPredicted RBP14.9□□□□□ -0.02
VPS54-203ENST00000409558 MYO6Q9UM54 1294 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 MOCS3O95396 460 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 CCNE1P24864 410 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 AOC3Q16853 763 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 QRICH1Q2TAL8 776 aa14.9□□□□□ -0.02
VPS54-203ENST00000409558 CERKLQ49MI3 558 aaPredicted RBP14.9□□□□□ -0.02
VPS54-203ENST00000409558 DCAF17Q5H9S7 520 aaPredicted RBP14.9□□□□□ -0.02
VPS54-203ENST00000409558 RBM26Q5T8P6 1007 aaKnown RBP14.9□□□□□ -0.02
VPS54-203ENST00000409558 POLRMTO00411 1230 aaKnown RBP14.89□□□□□ -0.03
VPS54-203ENST00000409558 CFBP00751 764 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 SLC7A5Q01650 507 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 C2orf54Q08AI8 447 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 TERF2Q15554 542 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 SLFN13Q68D06 897 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 SPZ1Q9BXG8 430 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 SH3GLB2Q9NR46 395 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 ZBTB21Q9ULJ3 1066 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 CRKP46108 304 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 WDR59Q6PJI9 974 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 GPBP1Q86WP2 473 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms