RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CYP2J2P51589 502 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 ZNF75DP51815 510 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 CNGA4Q8IV77 575 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 FAM163AQ96GL9 167 aaPredicted RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 TRIM6Q9C030 488 aaPredicted RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 CUEDC2Q9H467 287 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 GOLGA6L9A6NEM1 432 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 LRRIQ4A6NIV6 560 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 COBLO75128 1261 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 INPP5BP32019 993 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 COG2Q14746 738 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 NBPF12Q5TAG4 269 aaPredicted RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 C15orf52Q6ZUT6 534 aaKnown RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 RBM46Q8TBY0 533 aaKnown RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 UBXN4Q92575 508 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 GJA10Q969M2 543 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 TIGD1Q96MW7 591 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 ALS2CR12Q96Q35 445 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIG4-202ENST00000405925 FANCLQ9NW38 375 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 ZKSCAN5Q9Y2L8 839 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 CNTNAP5Q8WYK1 1306 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 UBE2Q2LH0YL09 131 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 DRC1Q96MC2 740 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 XPO4Q9C0E2 1151 aaKnown RBP10.09□□□□□ -0.79
LIG4-202ENST00000405925 MAGEF1Q9HAY2 307 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 STK17AQ9UEE5 414 aa10.09□□□□□ -0.79
LIG4-202ENST00000405925 AKR1B15C9JRZ8 316 aaPredicted RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 SMIM22K7EJ46 135 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 MTMR1Q13613 665 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 POTEDQ86YR6 584 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 TMEM87AQ8NBN3 555 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 CEP170P1Q96L14 293 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 BHMT2Q9H2M3 363 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 ADARB2Q9NS39 739 aaKnown RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 NRBP2Q9NSY0 501 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 MYO6Q9UM54 1294 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 CTNND1O60716 968 aaKnown RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 CAP2P40123 477 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 CTTNQ14247 550 aaKnown RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 LRRC41Q15345 812 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 NSUN6Q8TEA1 469 aaKnown RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 SLC7A3Q8WY07 619 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 NACC1Q96RE7 527 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 IWS1Q96ST2 819 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 SYNCQ9H7C4 482 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 ACAD9Q9H845 621 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 DISC1Q9NRI5 854 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 CCDC175P0C221 793 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 FDX1P10109 184 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 KRT9P35527 623 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 PAFAH1B1P43034 410 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 PRPF4BQ13523 1007 aaKnown RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 MORC3Q14149 939 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 HSP90B2PQ58FF3 399 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 FAM160B1Q5W0V3 765 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 PDXDC2PQ6P474 469 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 KCPQ6ZWJ8 1503 aa10.08□□□□□ -0.8
LIG4-202ENST00000405925 PHRF1Q9P1Y6 1649 aaKnown RBP10.08□□□□□ -0.8
LIG4-202ENST00000405925 PP2D1A8MPX8 630 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 SEC23AQ15436 765 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 IQCEQ6IPM2 695 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 FASTKD5Q7L8L6 764 aaKnown RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 PNMA8AQ86V59 439 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 ZFPM1Q8IX07 1006 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 MAP7D2Q96T17 732 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 TEX13BQ9BXU2 312 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 JMJD4Q9H9V9 463 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 C19orf81C9J6K1 198 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 PLA2G4BP0C869 781 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 CASP1P29466 404 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 EPHX2P34913 555 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 DMP1Q13316 513 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 ZBTB8OSQ8IWT0 167 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 CDAN1Q8IWY9 1227 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 BAG1Q99933 345 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 PHF20Q9BVI0 1012 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 ACBD3Q9H3P7 528 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 JADE2Q9NQC1 790 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 FAM207AQ9NSI2 230 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 KCNG1Q9UIX4 513 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.07□□□□□ -0.8
LIG4-202ENST00000405925 PCDHAC2Q9Y5I4 1007 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 RGPD2P0DJD1 1756 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 STXBP2Q15833 593 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 SPDYE2Q495Y8 402 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 MTERF2Q49AM1 385 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 WDR44Q5JSH3 913 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 ANKRD13AQ8IZ07 590 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 RIC8AQ9NPQ8 531 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 ARMCX3Q9UH62 379 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 DNAI1Q9UI46 699 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.07□□□□□ -0.8
LIG4-202ENST00000405925 UQCRHLA0A096LP55 91 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 MYCP01106 439 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 UQCRHP07919 91 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 LIG4P49917 911 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 RHBDL3P58872 404 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 KIF5AQ12840 1032 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 NOLC1Q14978 699 aaKnown RBP eCLIP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms