RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 GIT1Q9Y2X7 761 aa0.87□□□□□ -2.27
RNU6-540P-201ENST00000384622 SLC30A1Q9Y6M5 507 aa0.87□□□□□ -2.27
RNU6-540P-201ENST00000384622 SLC4A7Q9Y6M7 1214 aa0.87□□□□□ -2.27
RNU6-540P-201ENST00000384622 TBC1D4O60343 1298 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 TACR1P25103 407 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 SLC25A3Q00325 362 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 NMIQ13287 307 aaPredicted RBP0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 KRTAP5-7Q6L8G8 165 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 RALYLQ86SE5 291 aaKnown RBP0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 JAMLQ86YT9 394 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 GSPT2Q8IYD1 628 aaKnown RBP0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 THEMISQ8N1K5 641 aaPredicted RBP0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 ZNF655Q8N720 491 aaPredicted RBP0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 DAGLBQ8NCG7 672 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 GRIN3AQ8TCU5 1115 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 RNF141Q8WVD5 230 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 NEIL1Q96FI4 390 aaPredicted RBP0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 OR14A2Q96R54 314 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 CDADC1Q9BWV3 514 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 HDAC8Q9BY41 377 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 KDM4CQ9H3R0 1056 aa0.86□□□□□ -2.27
RNU6-540P-201ENST00000384622 TMEM238LA0A1B0GVL6 79 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ERI2A8K979 691 aaKnown RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ZBTB7AO95365 584 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ENDOUP21128 410 aaKnown RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 MZF1P28698 734 aaPredicted RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 GRK4P32298 578 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 POLGP54098 1239 aaPredicted RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 MLLT6P55198 1093 aaPredicted RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 SSBP2P81877 361 aaPredicted RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 HHEXQ03014 270 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 EHHADHQ08426 723 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 TRIM26Q12899 539 aaPredicted RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 CRHR2Q13324 411 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 LY6G5CQ5SRR4 150 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 NPNTQ6UXI9 565 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 SGMS1Q86VZ5 419 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ZDHHC17Q8IUH5 632 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 IFNL2Q8IZJ0 200 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ZNF276Q8N554 614 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 FAM98AQ8NCA5 519 aaKnown RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 PEX11GQ96HA9 241 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 CYP4F11Q9HBI6 524 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ABCB6Q9NP58 842 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 ERRFI1Q9UJM3 462 aaPredicted RBP0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 NUDT5Q9UKK9 219 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 CORINQ9Y5Q5 1042 aa0.85□□□□□ -2.27
RNU6-540P-201ENST00000384622 A0A1W2PNU3 283 aaPredicted RBP0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 KRTAP23-1A1A580 65 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 CYP7B1O75881 506 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 CAPNS1P04632 268 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 SF3B4Q15427 424 aaKnown RBP eCLIP0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 ERCC6LQ2NKX8 1250 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 KRTAP21-2Q3LI59 83 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 SLC6A19Q695T7 634 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 ETV3LQ6ZN32 361 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 CAPN12Q6ZSI9 719 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 TECPR1Q7Z6L1 1165 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 MRPL41Q8IXM3 137 aaKnown RBP0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 FAM26EQ8N5C1 309 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 RBMXL3Q8N7X1 1067 aaKnown RBP0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 BEND2Q8NDZ0 799 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 PROKR1Q8TCW9 393 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 ZNF384Q8TF68 577 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 NR4A3Q92570 626 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 PLPPR2Q96GM1 343 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 PRIMPOLQ96LW4 560 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 MKNK1Q9BUB5 465 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 MLST8Q9BVC4 326 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 SLC24A3Q9HC58 644 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 KMT5AQ9NQR1 393 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 MMP24Q9Y5R2 645 aa0.84□□□□□ -2.27
RNU6-540P-201ENST00000384622 COL4A3Q01955 1670 aa0.84□□□□□ -2.28
RNU6-540P-201ENST00000384622 CGB1A6NKQ9 187 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 GLI4P10075 376 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 CR2P20023 1033 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 NR4A1P22736 598 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 RAC3P60763 192 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 NHLH1Q02575 133 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 RRP1BQ14684 758 aaKnown RBP0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 NBPF6Q5VWK0 638 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 HLA-DQA1Q5Y7H0 255 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 MEPCEQ7L2J0 689 aaKnown RBP0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 CABP7Q86V35 215 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 ZC3H18Q86VM9 953 aaKnown RBP0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 SYNE4Q8N205 404 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 TMEM52Q8NDY8 209 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 FRS2Q8WU20 508 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 NBPF4Q96M43 638 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 TJP2Q9UDY2 1190 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 PROCRQ9UNN8 238 aa0.83□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L15C9J2P7 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L10C9JJH3 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L13C9JLJ4 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L12C9JPN9 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L11C9JVI0 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L21D6R901 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L18D6R9N7 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L22D6RA61 530 aa0.82□□□□□ -2.28
RNU6-540P-201ENST00000384622 USP17L17D6RBQ6 530 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms