RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 USP17L13C9JLJ4 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L11C9JVI0 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L18D6R9N7 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L22D6RA61 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L17D6RBQ6 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L19D6RCP7 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L20D6RJB6 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L24Q0WX57 530 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L6PQ6QN14 398 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 CYP26C1Q6V0L0 522 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 CNOT6LQ96LI5 555 aaKnown RBP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ZSWIM4Q9H7M6 989 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 MAGEF1Q9HAY2 307 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ATF5Q9Y2D1 282 aaPredicted RBP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 A0A1W2PQC6 194 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 hCG_1984214I3L0E3 225 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 PES1O00541 588 aaKnown RBP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ZRANB2O95218 330 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 EEF2P13639 858 aaKnown RBP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 CCDC96Q2M329 555 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ZNF713Q8N859 430 aaPredicted RBP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ZNF622Q969S3 477 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ZDHHC15Q96MV8 337 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 FGFBP2Q9BYJ0 223 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 CAPN11Q9UMQ6 739 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 ARFGEF1Q9Y6D6 1849 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 HERVK_113P62684 666 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 RRP1BQ14684 758 aaKnown RBP14.96□□□□□ -0.01
CCDC3-202ENST00000378839 TMEM119Q4V9L6 283 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 MASTLQ96GX5 879 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 ZBTB5O15062 677 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 EPHB6O15197 1021 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 EHHADHQ08426 723 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 DACT2Q5SW24 774 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 CENPPQ6IPU0 288 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 RAD54LQ92698 747 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 C10orf71Q711Q0 1435 aa14.96□□□□□ -0.01
CCDC3-202ENST00000378839 RCCD1A6NED2 376 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 ERCC3P19447 782 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 LRRC41Q15345 812 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 SV2BQ7L1I2 683 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 ANKRD20A12PQ8NF67 263 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 LARP4BQ92615 738 aaKnown RBP14.95□□□□□ -0.02
CCDC3-202ENST00000378839 CALML4Q96GE6 196 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 DDX25Q9UHL0 483 aaKnown RBP14.95□□□□□ -0.02
CCDC3-202ENST00000378839 MYO3BQ8WXR4 1341 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 NDUFA10O95299 355 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 ALDH1B1P30837 517 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 ORC2Q13416 577 aaPredicted RBP14.95□□□□□ -0.02
CCDC3-202ENST00000378839 STIM1Q13586 685 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 QRICH1Q2TAL8 776 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 PPP4R3AQ6IN85 833 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 SLX4Q8IY92 1834 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 OR8K1Q8NGG5 319 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 SNX29Q8TEQ0 813 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 EPN1Q9Y6I3 576 aaPredicted RBP14.95□□□□□ -0.02
CCDC3-202ENST00000378839 ERICH4A6NGS2 130 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 RAD21O60216 631 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 TRIM14Q14142 442 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 PDIA5Q14554 519 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 SEPT2Q15019 361 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 TEX35Q5T0J7 233 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 ZSCAN29Q8IWY8 852 aaPredicted RBP14.95□□□□□ -0.02
CCDC3-202ENST00000378839 EHD4Q9H223 541 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 PSTPIP2Q9H939 334 aa14.95□□□□□ -0.02
CCDC3-202ENST00000378839 SASH3O75995 380 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 CHRNA5P30532 468 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 PDE6BP35913 854 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 COBLL1Q53SF7 1204 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 DDX12PQ92771 950 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 DNAJC19Q96DA6 116 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 PUF60Q9UHX1 559 aaKnown RBP14.94□□□□□ -0.02
CCDC3-202ENST00000378839 KIF5CO60282 957 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 APBA3O96018 575 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 TPM1P09493 284 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 DNM2P50570 870 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 UNC13DQ70J99 1090 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 CUL5Q93034 780 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 PARD6BQ9BYG5 372 aa14.94□□□□□ -0.02
CCDC3-202ENST00000378839 LUC7L2Q9Y383 392 aaKnown RBP14.94□□□□□ -0.02
CCDC3-202ENST00000378839 NPHP3-ACAD11A0A0J9YXS1 232 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 ECE2O60344 883 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 GDF11O95390 407 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 PNMA6AP0CW24 399 aaPredicted RBP14.93□□□□□ -0.02
CCDC3-202ENST00000378839 PLA2G4AP47712 749 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 SEMA3FQ13275 785 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 MEA1Q16626 185 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 GPIHBP1Q8IV16 184 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 HLA-DOAP06340 250 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 STAT3P40763 770 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 TBC1D8BQ0IIM8 1120 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 GPATCH4Q5T3I0 446 aaKnown RBP14.93□□□□□ -0.02
CCDC3-202ENST00000378839 PPP1R18Q6NYC8 613 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 PODNQ7Z5L7 613 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 MKL1Q969V6 931 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 MAGEC2Q9UBF1 373 aaPredicted RBP14.93□□□□□ -0.02
CCDC3-202ENST00000378839 G3V3G9 751 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 PLEKP08567 350 aaPredicted RBP14.93□□□□□ -0.02
CCDC3-202ENST00000378839 DCAF8Q5TAQ9 597 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 TATDN1Q6P1N9 297 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms