RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TMEM132EQ6IEE7 984 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 FOXP3Q9BZS1 431 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 ANAPC2Q9UJX6 822 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 PRR12Q9ULL5 1215 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 SPTLC2O15270 562 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 RNF40O75150 1001 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 KHDRBS3O75525 346 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 RBMXL2O75526 392 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 ALDH1A2O94788 518 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TNFAIP3P21580 790 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TMPOP42166 694 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 HAND2P61296 217 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 AP1S1P61966 158 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CATSPER3Q86XQ3 398 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TDRPQ86YL5 185 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 RAB42Q8N4Z0 105 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC26Q8TAB7 109 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 EDEM3Q9BZQ6 932 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC90BQ9GZT6 254 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 RMND1Q9NWS8 449 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 RAB23Q9ULC3 237 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 STRIP2Q9ULQ0 834 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 GOLGA8MH3BSY2 632 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 PYGMP11217 842 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CYP2C19P33261 490 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 NCALDP61601 193 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC184Q52MB2 194 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 IYDQ6PHW0 289 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TBC1D1Q86TI0 1168 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 KRT78Q8N1N4 520 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CAPSLQ8WWF8 208 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 LRRC37BQ96QE4 947 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 GINS4Q9BRT9 223 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TMEM245Q9H330 911 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 MLXIPQ9HAP2 919 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 DDX28Q9NUL7 540 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 IFNB1P01574 187 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 HSPD1P10809 573 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 GOLGA8DPQ0D2H9 430 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 UBL4BQ8N7F7 174 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 DDX17Q92841 729 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 GAL3ST3Q96A11 431 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 SH2D4AQ9H788 454 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CASS4Q9NQ75 786 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 DDX25Q9UHL0 483 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 PPP2R3BQ9Y5P8 575 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC171Q6TFL3 1326 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 IQCMA0A1B0GVH7 501 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 PSMD12O00232 456 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TLR3O15455 904 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 PRODHO43272 600 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 ITGA3P26006 1051 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 NEK2P51955 445 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 PWP1Q13610 501 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 SUZ12Q15022 739 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 SYTL3Q4VX76 610 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 NCOA7Q8NI08 942 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 TSEN34Q9BSV6 310 aaKnown RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 ACTR5Q9H9F9 607 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-202ENST00000375405 IMPACTQ9P2X3 320 aa5.03□□□□□ -1.6
SCN1A-202ENST00000375405 EBAG9O00559 213 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 MCF2P10911 925 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 YWHAZP63104 245 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 USH1GQ495M9 461 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SPDYE7PQ495Y7 208 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TTBK2Q6IQ55 1244 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 KIAA2013Q8IYS2 634 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC185Q8N715 623 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PMM1Q92871 262 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CYTH2Q99418 400 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 AP5M1Q9H0R1 490 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TUFT1Q9NNX1 390 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PRMT3O60678 531 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TNFRSF8P28908 595 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 GGCXP38435 758 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ANKRD20A4Q4UJ75 823 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ANKRD20A8PQ5CZ79 823 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ANKRD20A2Q5SQ80 823 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ANKRD20A1Q5TYW2 823 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 LAYNQ6UX15 382 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PPP4R3CPQ6ZMV5 832 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 FSIP1Q8NA03 581 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 GLMNQ92990 594 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 RRP36Q96EU6 259 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ECHDC1Q9NTX5 307 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 DNAJC17Q9NVM6 304 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF232Q9UNY5 417 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 FAN1Q9Y2M0 1017 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SCAPERQ9BY12 1400 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 H7C1D1 291 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 EXOC5O00471 708 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ATF7P17544 494 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 RCN2Q14257 317 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 DMC1Q14565 340 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TWISTNBQ3B726 338 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM67Q6ZTA4 783 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC149Q6ZUS6 474 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PPP2R3CQ969Q6 453 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ADPGKQ9BRR6 497 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms