RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SLC12A2P55011 1212 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 CYP4A11Q02928 519 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 ICA1Q05084 483 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 SLFN13Q68D06 897 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 KRT26Q7Z3Y9 468 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 PLA2G4DQ86XP0 818 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 BBOF1Q8ND07 529 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 STK38LQ9Y2H1 464 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 TXNDC9O14530 226 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 SH3BP5O60239 455 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 POLR2BP30876 1174 aaKnown RBP12.5□□□□□ -0.41
PTPRF-203ENST00000372407 MAN1A1P33908 653 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 BTDP43251 543 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 PDE6CP51160 858 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 FAM102BQ5T8I3 360 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 SEPT14Q6ZU15 432 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 MICAL1Q8TDZ2 1067 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 KIAA1024Q9UPX6 916 aa12.5□□□□□ -0.41
PTPRF-203ENST00000372407 ALAS1P13196 640 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 ADD2P35612 726 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 MAN2A1Q16706 1144 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 CCDC13Q8IYE1 715 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 UHMK1Q8TAS1 419 aaKnown RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 PASKQ96RG2 1323 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 NR2F2P24468 414 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 ODR4Q5SWX8 454 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 NAA35Q5VZE5 725 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 BSPRYQ5W0U4 402 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 MAGOHBQ96A72 148 aaKnown RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 TACO1Q9BSH4 297 aaKnown RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 AMNQ9BXJ7 453 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 RNF14Q9UBS8 474 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 PNMA2Q9UL42 364 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 A0A087WWV3 80 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 MYO1FO00160 1098 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 ATF7P17544 494 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 RBL2Q08999 1139 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 RESTQ13127 1097 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 NSMCE1Q8WV22 266 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 PIGBQ92521 554 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 EPSTI1Q96J88 318 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 ZNF148Q9UQR1 794 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 BCORL1Q5H9F3 1711 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 FAM170AA1A519 330 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 MMP1P03956 469 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 IL6STP40189 918 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 LIFRP42702 1097 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 CCT5P48643 541 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 EPHB4P54760 987 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 KCNQ4P56696 695 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 BPIFB4P59827 614 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 NR5A1Q13285 461 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 TNFAIP1Q13829 316 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 ZBTB8OSQ8IWT0 167 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 PROCA1Q8NCQ7 364 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-203ENST00000372407 OSBP2Q969R2 916 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 HINFPQ9BQA5 517 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 TEKT3Q9BXF9 490 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 MIS12Q9H081 205 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.49□□□□□ -0.412e-7■■□□□ 12
PTPRF-203ENST00000372407 PCDHA4Q9UN74 947 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 RABGAP1Q9Y3P9 1069 aa12.49□□□□□ -0.41
PTPRF-203ENST00000372407 ZNF804BA4D1E1 1349 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 PPIP5K2O43314 1243 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 LMNB1P20700 586 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 MAP3K21Q5TCX8 1036 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 SMYD4Q8IYR2 804 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 BCS1LQ9Y276 419 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 OVOS2A0A0G2JMS6 1433 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 OVOS2A0A0J9YW53 1432 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 TECPR2O15040 1411 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 OVOS2Q6IE36 1432 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 RNF8O76064 485 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 DLATP10515 647 aaKnown RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 GCFC2P16383 781 aaKnown RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 NSFP46459 744 aaKnown RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 PTPN12Q05209 780 aaKnown RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 ZNF658Q5TYW1 1059 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 USPL1Q5W0Q7 1092 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 KCTD16Q68DU8 428 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 HAUS1Q96CS2 278 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 RAB3IPQ96QF0 476 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 MAN1B1Q9UKM7 699 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 PALLDQ8WX93 1383 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 CDK12Q9NYV4 1490 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-203ENST00000372407 SLIT1O75093 1534 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 LARGE1O95461 756 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 ZBED6P86452 979 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 ASPRV1Q53RT3 343 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 KIAA0825Q8IV33 1275 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 VSTM4Q8IW00 320 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 STK17AQ9UEE5 414 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 TTLL3Q9Y4R7 772 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 VWDEQ8N2E2 1590 aa12.48□□□□□ -0.41
PTPRF-203ENST00000372407 ABCC12Q96J65 1359 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 ATF2P15336 505 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 YARSP54577 528 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 PTK2Q05397 1052 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms