RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 NOVP48745 357 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 PDE4DQ08499 809 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 SEC62Q99442 399 aaKnown RBP16.34■□□□□ 0.21
VPS29-201ENST00000360579 FSD1Q9BTV5 496 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 EPHX3Q9H6B9 360 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 DCTPP1Q9H773 170 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 LMCD1Q9NZU5 365 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 MTMR7Q9Y216 660 aa16.34■□□□□ 0.21
VPS29-201ENST00000360579 TCF20Q9UGU0 1960 aaKnown RBP16.34■□□□□ 0.21
VPS29-201ENST00000360579 NFIBO00712 420 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 RANBP6O60518 1105 aaKnown RBP16.33■□□□□ 0.2
VPS29-201ENST00000360579 GRB10Q13322 594 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 ZMYM1Q5SVZ6 1142 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 SYDE2Q5VT97 1194 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 RNF207Q6ZRF8 634 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 DNERQ8NFT8 737 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 CAGE1Q8TC20 777 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 AFAP1L1Q8TED9 768 aa16.33■□□□□ 0.2
VPS29-201ENST00000360579 NMT2O60551 498 aa16.32■□□□□ 0.2
VPS29-201ENST00000360579 GPR37L1O60883 481 aa16.32■□□□□ 0.2
VPS29-201ENST00000360579 PARNO95453 639 aaKnown RBP16.32■□□□□ 0.2
VPS29-201ENST00000360579 CALML3P27482 149 aa16.32■□□□□ 0.2
VPS29-201ENST00000360579 KRT40Q6A162 431 aa16.32■□□□□ 0.2
VPS29-201ENST00000360579 ANAPC4Q9UJX5 808 aa16.32■□□□□ 0.2
VPS29-201ENST00000360579 ORC4O43929 436 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 TXNP10599 105 aaKnown RBP16.31■□□□□ 0.2
VPS29-201ENST00000360579 TOP1P11387 765 aaKnown RBP16.31■□□□□ 0.2
VPS29-201ENST00000360579 EDNRBP24530 442 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 SLC16A2P36021 539 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 CTDSPL2Q05D32 466 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 PTGISQ16647 500 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 SLC30A10Q6XR72 485 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 RASGRP2Q7LDG7 609 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 ZBED2Q9BTP6 218 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 SCN10AQ9Y5Y9 1956 aa16.31■□□□□ 0.2
VPS29-201ENST00000360579 WDR19Q8NEZ3 1342 aa16.3■□□□□ 0.2
VPS29-201ENST00000360579 LPXNO60711 386 aa16.3■□□□□ 0.2
VPS29-201ENST00000360579 ARHGEF15O94989 841 aa16.3■□□□□ 0.2
VPS29-201ENST00000360579 WDR5P61964 334 aaKnown RBP16.3■□□□□ 0.2
VPS29-201ENST00000360579 RPS6P62753 249 aaKnown RBP16.3■□□□□ 0.2
VPS29-201ENST00000360579 TTBK2Q6IQ55 1244 aa16.3■□□□□ 0.2
VPS29-201ENST00000360579 CLEC4DQ8WXI8 215 aa16.3■□□□□ 0.2
VPS29-201ENST00000360579 LCTP09848 1927 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 EFCAB14O75071 495 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 FGRP09769 529 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 SELPP16109 830 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 CNKSR3Q6P9H4 555 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 SESTD1Q86VW0 696 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 PI4K2BQ8TCG2 481 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 MAF1Q9H063 256 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 RCAN3Q9UKA8 241 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 TANC1Q9C0D5 1861 aa16.29■□□□□ 0.2
VPS29-201ENST00000360579 SCN5AQ14524 2016 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 FRMPD2Q68DX3 1309 aaPredicted RBP16.28■□□□□ 0.2
VPS29-201ENST00000360579 CHMP4BP1P59074 171 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 LRRC8DQ7L1W4 858 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 RGS22Q8NE09 1264 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 COPS5Q92905 334 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 RAD9AQ99638 391 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 TMEM47Q9BQJ4 181 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 GPCPD1Q9NPB8 672 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 INCENPQ9NQS7 918 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 TOMM22Q9NS69 142 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 TCP11L1Q9NUJ3 509 aa16.28■□□□□ 0.2
VPS29-201ENST00000360579 PIEZO1Q92508 2521 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 ABHD14A-ACY1A0A1B0GW23 586 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 SPDYE4A6NLX3 237 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 PI4K2BG5E9Z4 385 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 FOXP2O15409 715 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 GJB5O95377 273 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 CXCL10P02778 98 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 CASTP20810 708 aaKnown RBP16.27■□□□□ 0.2
VPS29-201ENST00000360579 RBL2Q08999 1139 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 GDPD5Q8WTR4 605 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 PPP1R13LQ8WUF5 828 aa16.27■□□□□ 0.2
VPS29-201ENST00000360579 TGS1Q96RS0 853 aaKnown RBP16.27■□□□□ 0.2
VPS29-201ENST00000360579 LCHNA4D1U4 455 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 GH1P01241 217 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 MMP3P08254 477 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 PDHBP11177 359 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 ERVK-21P61565 698 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 ZNF543Q08ER8 600 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 ALX1Q15699 326 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 C20orf194Q5TEA3 1177 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 AFG1LQ8WV93 481 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 TTC14Q96N46 770 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 UBE2ZQ9H832 354 aaPredicted RBP16.26■□□□□ 0.19
VPS29-201ENST00000360579 C11orf16Q9NQ32 467 aa16.26■□□□□ 0.19
VPS29-201ENST00000360579 ARIH2O95376 493 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 DEFB103AP81534 67 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 IKBKEQ14164 716 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 DGKDQ16760 1214 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 RRP12Q5JTH9 1297 aaKnown RBP16.25■□□□□ 0.19
VPS29-201ENST00000360579 GPATCH4Q5T3I0 446 aaKnown RBP16.25■□□□□ 0.19
VPS29-201ENST00000360579 GDF6Q6KF10 455 aaPredicted RBP16.25■□□□□ 0.19
VPS29-201ENST00000360579 CCDC62Q6P9F0 684 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 SPRED2Q7Z698 418 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 C7orf31Q8N865 590 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 CTAGE1Q96RT6 745 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 CRBNQ96SW2 442 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms