RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PNMA2Q9UL42 364 aa17.02■□□□□ 0.32
PTPRF-201ENST00000359947 PALLDQ8WX93 1383 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 ARHGEF25Q86VW2 580 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 TBCKQ8TEA7 893 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 SOS2Q07890 1332 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-201ENST00000359947 ECE1P42892 770 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 GTF2A1P52655 376 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-201ENST00000359947 SUSD4Q5VX71 490 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 RINT1Q6NUQ1 792 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 MCUQ8NE86 351 aa17.02■□□□□ 0.31
PTPRF-201ENST00000359947 BLMP54132 1417 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-201ENST00000359947 CLGNO14967 610 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 CD58P19256 250 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 POLR2BP30876 1174 aaKnown RBP17.01■□□□□ 0.31
PTPRF-201ENST00000359947 EN1Q05925 392 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-201ENST00000359947 SCRN1Q12765 414 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 CCDC170Q8IYT3 715 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 MAIP1Q8WWC4 291 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 SLC38A10Q9HBR0 1119 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 NACC1Q96RE7 527 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 ZBBXA8MT70 800 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 DPH5Q9H2P9 285 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 ZHX2Q9Y6X8 837 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 PTPRTO14522 1441 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 PTK2Q05397 1052 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 VSIG1Q86XK7 387 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 CFAP43Q8NDM7 1665 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 BFSP1Q12934 665 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 PRPSAP1Q14558 356 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 NUF2Q9BZD4 464 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 ZNF148Q9UQR1 794 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 GSPT1P15170 499 aaKnown RBP17.01■□□□□ 0.31
PTPRF-201ENST00000359947 ATP11AP98196 1134 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 RBBP5Q15291 538 aaKnown RBP17.01■□□□□ 0.31
PTPRF-201ENST00000359947 UBE3CQ15386 1083 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 PCDHA4Q9UN74 947 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 PZPP20742 1482 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 GALNT17Q6IS24 598 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 PPFIBP2Q8ND30 876 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 GCNAQ96QF7 691 aa17.01■□□□□ 0.31
PTPRF-201ENST00000359947 MYOM2P54296 1465 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 PDIA3P30101 505 aaKnown RBP17■□□□□ 0.31
PTPRF-201ENST00000359947 EXOC3L4Q17RC7 722 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 GRAPQ13588 217 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 MESDQ14696 234 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 GRAPLQ8TC17 118 aaPredicted RBP17■□□□□ 0.31
PTPRF-201ENST00000359947 DDIT3P35638 169 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 RAPH1Q70E73 1250 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17■□□□□ 0.31
PTPRF-201ENST00000359947 WRNIP1Q96S55 665 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 TCOF1Q13428 1488 aaKnown RBP17■□□□□ 0.31
PTPRF-201ENST00000359947 PFDN6O15212 129 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 NDUFA8P51970 172 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 C1orf228Q6PIY5 440 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 TMC4Q7Z404 712 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 HDAC11Q96DB2 347 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 PNMA3Q9UL41 463 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 CEP170Q5SW79 1584 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 FAM196BA6NMK8 535 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 SGK1O00141 431 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 ANXA13P27216 316 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 DYNLT1P63172 113 aa17■□□□□ 0.31
PTPRF-201ENST00000359947 SMYD4Q8IYR2 804 aaPredicted RBP17■□□□□ 0.31
PTPRF-201ENST00000359947 GH2P01242 217 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 CCDC13Q8IYE1 715 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 KIAA1468Q9P260 1216 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 CDC25AP30304 524 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 CASP2P42575 452 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 KRT71Q3SY84 523 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 PFKFB2O60825 505 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 ATP10DQ9P241 1426 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 NR2F2P24468 414 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 SLC12A1Q13621 1099 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 DSTYKQ6XUX3 929 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 GDAP1Q8TB36 358 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 RAB17Q9H0T7 212 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 TDRD3Q9H7E2 651 aaKnown RBP16.99■□□□□ 0.31
PTPRF-201ENST00000359947 SUDS3Q9H7L9 328 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-201ENST00000359947 MOSPD1Q9UJG1 213 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 NDUFAB1O14561 156 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 ANKRD13CQ8N6S4 541 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 CACTINQ8WUQ7 758 aaKnown RBP16.99■□□□□ 0.31
PTPRF-201ENST00000359947 MIS12Q9H081 205 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 ZMYM4Q5VZL5 1548 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 LARP4BQ92615 738 aaKnown RBP16.99■□□□□ 0.31
PTPRF-201ENST00000359947 NT5C1BQ96P26 610 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 SLC12A6Q9UHW9 1150 aa16.99■□□□□ 0.31
PTPRF-201ENST00000359947 TXNDC9O14530 226 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 PAK2Q13177 524 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 CDC37Q16543 378 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 JPH2Q9BR39 696 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 PUS7LQ9H0K6 701 aaKnown RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 FEZ2Q9UHY8 353 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 MFAP3P55082 362 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 EXOC8Q8IYI6 725 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 DHX36Q9H2U1 1008 aaKnown RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 IPO11Q9UI26 975 aaKnown RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 ARHGEF12Q9NZN5 1544 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 NLRP1Q9C000 1473 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 ZNF589Q86UQ0 364 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms