RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 FASTKD5Q7L8L6 764 aaKnown RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ANKRD36BP1Q96IX9 119 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 TYW1Q9NV66 732 aaKnown RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 DDX41Q9UJV9 622 aaKnown RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ANGEL1Q9UNK9 670 aaKnown RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ZNF148Q9UQR1 794 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ADGRB3O60242 1522 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 hCG_1642624A0A1W2PR95 340 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 VAMP4O75379 141 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 PTK2BQ14289 1009 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 SLC9A5Q14940 896 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 SEPT9Q9UHD8 586 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ADAT2Q7Z6V5 191 aaKnown RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 MLKLQ8NB16 471 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 GOLGA5Q8TBA6 731 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 LZICQ8WZA0 190 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 FAM149B1Q96BN6 582 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ERO1AQ96HE7 468 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 ATP8A2Q9NTI2 1148 aa11.09□□□□□ -0.63
CLIP1-202ENST00000358808 TPX2Q9ULW0 747 aaKnown RBP11.09□□□□□ -0.63
CLIP1-202ENST00000358808 DIP2CQ9Y2E4 1556 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 SGK1O00141 431 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 GPAA1O43292 621 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 ZNF467Q7Z7K2 595 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-202ENST00000358808 PPM1KQ8N3J5 372 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 TRIM35Q9UPQ4 493 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 ATP2B4P23634 1241 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 RCN2Q14257 317 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 RNF219Q5W0B1 726 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-202ENST00000358808 SPATA5Q8NB90 893 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 CCDC127Q96BQ5 260 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 DPH5Q9H2P9 285 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 LGR6Q9HBX8 967 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 NCOA5Q9HCD5 579 aaKnown RBP11.08□□□□□ -0.64
CLIP1-202ENST00000358808 ANLNQ9NQW6 1124 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 EPS15L1Q9UBC2 864 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 INHBAP08476 426 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 IFNA8P32881 189 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 RAP1GDS1P52306 607 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 POSTNQ15063 836 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 CCDC84Q86UT8 332 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-202ENST00000358808 UHMK1Q8TAS1 419 aaKnown RBP11.08□□□□□ -0.64
CLIP1-202ENST00000358808 STAMQ92783 540 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 TTC25Q96NG3 672 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 KCNJ14Q9UNX9 436 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 PCDHB4Q9Y5E5 795 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 DNAAF3Q8N9W5 541 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 LRRC8CQ8TDW0 803 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 PSTPIP2Q9H939 334 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 BABAM1Q9NWV8 329 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 CAMSAP1Q5T5Y3 1602 aa11.08□□□□□ -0.64
CLIP1-202ENST00000358808 RIMS1Q86UR5 1692 aaKnown RBP11.08□□□□□ -0.64
CLIP1-202ENST00000358808 KDM5AP29375 1690 aaKnown RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 HSPA8P11142 646 aaKnown RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 CPA1P15085 419 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 EEF1GP26641 437 aaKnown RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 POLA2Q14181 598 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 RETREG2Q8NC44 543 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 CERKQ8TCT0 537 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 HOMER3Q9NSC5 361 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 PANK4Q9NVE7 773 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 PSDA5PKW4 1024 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 ZNF233A6NK53 670 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 ERVV-2B6SEH9 535 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 NSFP46459 744 aaKnown RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 NLRP12P59046 1061 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 YWHAHQ04917 246 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 PHKBQ93100 1093 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 SYNDIG1Q9H7V2 258 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 SLFN12Q8IYM2 578 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 MYOCDQ8IZQ8 938 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 RMDN2Q96LZ7 410 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 METTL14Q9HCE5 456 aaKnown RBP11.07□□□□□ -0.64
CLIP1-202ENST00000358808 DPYSL4O14531 572 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 NFKBIAP25963 317 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 NDUFAF2Q8N183 169 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 ELMOD1Q8N336 334 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 SNX19Q92543 992 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 APPBP2Q92624 585 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 DRC3Q9H069 523 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 PTPRTO14522 1441 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 BUB1O43683 1085 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 HIP1RO75146 1068 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 CPP00450 1065 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 ATICP31939 592 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 PLA2G4DQ86XP0 818 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 FAM178BQ8IXR5 827 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 TRIML1Q8N9V2 468 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 STAG1Q8WVM7 1258 aa11.07□□□□□ -0.64
CLIP1-202ENST00000358808 IBTKQ9P2D0 1353 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 TECP42680 631 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 ZC3H12BQ5HYM0 836 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 BBOF1Q8ND07 529 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 ARHGEF1Q92888 912 aaKnown RBP11.06□□□□□ -0.64
CLIP1-202ENST00000358808 VPS54Q9P1Q0 977 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 POC1B-GALNT4F8VUJ3 575 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 SCNN1DP51172 638 aa11.06□□□□□ -0.64
CLIP1-202ENST00000358808 TEKT4Q8WW24 435 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms