RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 DOCK5Q9H7D0 1870 aa19.56■□□□□ 0.72
CLN3-203ENST00000357806 ADCY6O43306 1168 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 PGK1P00558 417 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 EIF2AK2P19525 551 aaKnown RBP19.55■□□□□ 0.72
CLN3-203ENST00000357806 ADCYAP1R1P41586 468 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 TNFAIP2Q03169 654 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 ANKRD1Q15327 319 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 LRRC41Q15345 812 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 TAPT1Q6NXT6 567 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 GPKOWQ92917 476 aaPredicted RBP eCLIP19.55■□□□□ 0.72
CLN3-203ENST00000357806 ALDH8A1Q9H2A2 487 aaPredicted RBP19.55■□□□□ 0.72
CLN3-203ENST00000357806 SPC25Q9HBM1 224 aa19.55■□□□□ 0.72
CLN3-203ENST00000357806 RBM27Q9P2N5 1060 aaKnown RBP19.55■□□□□ 0.72
CLN3-203ENST00000357806 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.54■□□□□ 0.72
CLN3-203ENST00000357806 ADAMTS4O75173 837 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 COL6A1P12109 1028 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 CCT2P78371 535 aaKnown RBP19.54■□□□□ 0.72
CLN3-203ENST00000357806 WWC2Q6AWC2 1192 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 IQSEC1Q6DN90 963 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 PPP1R18Q6NYC8 613 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 SMARCC2Q8TAQ2 1214 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 V9GY48 417 aaPredicted RBP19.54■□□□□ 0.72
CLN3-203ENST00000357806 PIK3CDO00329 1044 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 STXBP2Q15833 593 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 NOL8Q76FK4 1167 aaKnown RBP19.54■□□□□ 0.72
CLN3-203ENST00000357806 FCHSD1Q86WN1 690 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 PDGFCQ9NRA1 345 aa19.54■□□□□ 0.72
CLN3-203ENST00000357806 C6orf222P0C671 652 aaPredicted RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 NAPAP54920 295 aa19.53■□□□□ 0.72
CLN3-203ENST00000357806 AKAP17AQ02040 695 aaKnown RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 TLK2Q86UE8 772 aa19.53■□□□□ 0.72
CLN3-203ENST00000357806 SCFD2Q8WU76 684 aa19.53■□□□□ 0.72
CLN3-203ENST00000357806 PDCD2LQ9BRP1 358 aa19.53■□□□□ 0.72
CLN3-203ENST00000357806 LARP6Q9BRS8 491 aaKnown RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 RNF26Q9BY78 433 aaPredicted RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 UPF3AQ9H1J1 476 aaKnown RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 PSTPIP2Q9H939 334 aa19.53■□□□□ 0.72
CLN3-203ENST00000357806 NCOA5Q9HCD5 579 aaKnown RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 GNEQ9Y223 722 aaKnown RBP19.53■□□□□ 0.72
CLN3-203ENST00000357806 FRMPD4Q14CM0 1322 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 DNAH12Q6ZR08 3092 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 RBM47A0AV96 593 aaKnown RBP19.52■□□□□ 0.72
CLN3-203ENST00000357806 MEIS2O14770 477 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 NR3C2P08235 984 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 SCG2P13521 617 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 IFNAR1P17181 557 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 SMPD1P17405 629 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 CST5P28325 142 aaPredicted RBP19.52■□□□□ 0.72
CLN3-203ENST00000357806 AK2P54819 239 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 GJA9P57773 515 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 PGM5Q15124 567 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 NTRK3Q16288 839 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 PFKFB3Q16875 520 aaPredicted RBP19.52■□□□□ 0.72
CLN3-203ENST00000357806 USP17L6PQ6QN14 398 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 WDR11Q9BZH6 1224 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 SENP6Q9GZR1 1112 aaPredicted RBP19.52■□□□□ 0.72
CLN3-203ENST00000357806 UPF2Q9HAU5 1272 aaKnown RBP19.52■□□□□ 0.72
CLN3-203ENST00000357806 BARHL2Q9NY43 387 aa19.52■□□□□ 0.72
CLN3-203ENST00000357806 STXBP3O00186 592 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 CPLX1O14810 134 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 PRPF3O43395 683 aaKnown RBP19.51■□□□□ 0.71
CLN3-203ENST00000357806 NEK4P51957 841 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 STK3Q13188 491 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 DUSP28Q4G0W2 176 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 CPLX2Q6PUV4 134 aaKnown RBP19.51■□□□□ 0.71
CLN3-203ENST00000357806 TEX2Q8IWB9 1127 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 KLHDC9Q8NEP7 349 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 DPF3Q92784 378 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 PHKBQ93100 1093 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 TSEN34Q9BSV6 310 aaKnown RBP19.51■□□□□ 0.71
CLN3-203ENST00000357806 C22orf23Q9BZE7 217 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 Q9Y3F1 56 aa19.51■□□□□ 0.71
CLN3-203ENST00000357806 NKRFO15226 690 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLN3-203ENST00000357806 EIF3JO75822 258 aaKnown RBP19.5■□□□□ 0.71
CLN3-203ENST00000357806 MYCLP12524 364 aaPredicted RBP19.5■□□□□ 0.71
CLN3-203ENST00000357806 CCND2P30279 289 aa19.5■□□□□ 0.71
CLN3-203ENST00000357806 TTLL4Q14679 1199 aa19.5■□□□□ 0.71
CLN3-203ENST00000357806 TRIM22Q8IYM9 498 aa19.5■□□□□ 0.71
CLN3-203ENST00000357806 PCSK9Q8NBP7 692 aaKnown RBP19.5■□□□□ 0.71
CLN3-203ENST00000357806 SLC26A6Q9BXS9 759 aa19.5■□□□□ 0.71
CLN3-203ENST00000357806 AP5M1Q9H0R1 490 aa19.5■□□□□ 0.71
CLN3-203ENST00000357806 SLKQ9H2G2 1235 aaPredicted RBP19.5■□□□□ 0.71
CLN3-203ENST00000357806 PHF24Q9UPV7 400 aa19.5■□□□□ 0.71
CLN3-203ENST00000357806 MYADML2A6NDP7 307 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 MOXD2PA6NHM9 499 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 NKX3-2P78367 333 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 TYW1BQ6NUM6 668 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 SEPT14Q6ZU15 432 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 CCDC12Q8WUD4 166 aaPredicted RBP19.49■□□□□ 0.71
CLN3-203ENST00000357806 GLT8D2Q9H1C3 349 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 RIC8AQ9NPQ8 531 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 TPCN1Q9ULQ1 816 aa19.49■□□□□ 0.71
CLN3-203ENST00000357806 SPDYE3A6NKU9 549 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 EVI5O60447 810 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 RBM25P49756 843 aaKnown RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 ADCY7P51828 1080 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 SCRN1Q12765 414 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 UBE2SQ16763 222 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 GNASQ5JWF2 1037 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 VSIG10LQ86VR7 867 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms