RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 GNGT1P63211 74 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 DIXDC1Q155Q3 683 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 GLE1Q53GS7 698 aaKnown RBP17.65■□□□□ 0.42
HMGA1-202ENST00000347617 EMC10Q5UCC4 262 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 PRPF38AQ8NAV1 312 aaKnown RBP17.65■□□□□ 0.42
HMGA1-202ENST00000347617 TRIM58Q8NG06 486 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 CAVIN3Q969G5 261 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 CHP1Q99653 195 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 ZNF287Q9HBT7 754 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 MCM9Q9NXL9 1143 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 C10orf71Q711Q0 1435 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 TTC26A0AVF1 554 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 RIMBP2O15034 1052 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 PRPF3O43395 683 aaKnown RBP17.64■□□□□ 0.41
HMGA1-202ENST00000347617 PARP1P09874 1014 aaKnown RBP17.64■□□□□ 0.41
HMGA1-202ENST00000347617 CALM1P0DP23 149 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 CALM2P0DP24 149 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 CALM3P0DP25 149 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 PPP1R2P41236 205 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 BTDP43251 543 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 ZNF654Q8IZM8 581 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 ZNF507Q8TCN5 953 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 RBM28Q9NW13 759 aaKnown RBP17.64■□□□□ 0.41
HMGA1-202ENST00000347617 MAGEC2Q9UBF1 373 aaPredicted RBP17.64■□□□□ 0.41
HMGA1-202ENST00000347617 GRIN2DO15399 1336 aa17.64■□□□□ 0.41
HMGA1-202ENST00000347617 A0A1W2PQJ5 194 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 RNF225M0QZC1 329 aaPredicted RBP17.63■□□□□ 0.41
HMGA1-202ENST00000347617 KIF1CO43896 1103 aaKnown RBP17.63■□□□□ 0.41
HMGA1-202ENST00000347617 USO1O60763 962 aaKnown RBP17.63■□□□□ 0.41
HMGA1-202ENST00000347617 TACC1O75410 805 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 TCP1P17987 556 aaKnown RBP17.63■□□□□ 0.41
HMGA1-202ENST00000347617 LIG3P49916 1009 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 RHBDL3P58872 404 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 ZBED6P86452 979 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 KIF5AQ12840 1032 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 PLCB4Q15147 1175 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 FIGNQ5HY92 759 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 PDXDC2PQ6P474 469 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 HHIPL2Q6UWX4 724 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 ANKS1AQ92625 1134 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 CABS1Q96KC9 395 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 G3V3G9 751 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 IDEP14735 1019 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 MAP2K2P36507 400 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 MNAT1P51948 309 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 VAV2P52735 878 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 HDLBPQ00341 1268 aaKnown RBP17.63■□□□□ 0.41
HMGA1-202ENST00000347617 DRP2Q13474 957 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 KCNB1Q14721 858 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 TTC38Q5R3I4 469 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 DCAF8Q5TAQ9 597 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 STRIP1Q5VSL9 837 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 FAM114A1Q8IWE2 563 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 OXER1Q8TDS5 423 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 SECISBP2LQ93073 1101 aaKnown RBP17.63■□□□□ 0.41
HMGA1-202ENST00000347617 TCP11L1Q9NUJ3 509 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 HDAC6Q9UBN7 1215 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 TNKSO95271 1327 aa17.63■□□□□ 0.41
HMGA1-202ENST00000347617 SNED1Q8TER0 1413 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 CYP2D7A0A087X1C5 515 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 ENC1O14682 589 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 RPN1P04843 607 aaKnown RBP17.62■□□□□ 0.41
HMGA1-202ENST00000347617 ARL6IP4Q66PJ3 421 aaKnown RBP17.62■□□□□ 0.41
HMGA1-202ENST00000347617 SND1Q7KZF4 910 aaKnown RBP eCLIP17.62■□□□□ 0.41
HMGA1-202ENST00000347617 DEFB132Q7Z7B7 95 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 SMYD4Q8IYR2 804 aaPredicted RBP17.62■□□□□ 0.41
HMGA1-202ENST00000347617 ENAHQ8N8S7 591 aaPredicted RBP17.62■□□□□ 0.41
HMGA1-202ENST00000347617 VPS33BQ9H267 617 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 PLEKHA4Q9H4M7 779 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 RNF14Q9UBS8 474 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 SNX12Q9UMY4 172 aa17.62■□□□□ 0.41
HMGA1-202ENST00000347617 SLX4Q8IY92 1834 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 CDC25AP30304 524 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 LONP1P36776 959 aaKnown RBP17.61■□□□□ 0.41
HMGA1-202ENST00000347617 WDR59Q6PJI9 974 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 TEX11Q8IYF3 940 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 ADSSL1Q8N142 457 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 TGFBRAP1Q8WUH2 860 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 CAPZA3Q96KX2 299 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 TSKSQ9UJT2 592 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 TAOK2Q9UL54 1235 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 UBE2Q2LH0YL09 131 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 DDAH1O94760 285 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 USP17L8P0C7I0 530 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 CHRNA5P30532 468 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 SPA17Q15506 151 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 IFIT1BQ5T764 474 aaKnown RBP17.61■□□□□ 0.41
HMGA1-202ENST00000347617 CATIPQ7Z7H3 387 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 DGKHQ86XP1 1220 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 OTUD6BQ8N6M0 293 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 RIN2Q8WYP3 895 aaPredicted RBP17.61■□□□□ 0.41
HMGA1-202ENST00000347617 KAT2BQ92831 832 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 CXorf56Q9H5V9 222 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 TRIM10Q9UDY6 481 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 DAGLAQ9Y4D2 1042 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 HYOU1Q9Y4L1 999 aa17.61■□□□□ 0.41
HMGA1-202ENST00000347617 LOC102724159A0A0B4J2E5 919 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 MEFVO15553 781 aaPredicted RBP17.6■□□□□ 0.41
HMGA1-202ENST00000347617 PWP2Q15269 919 aaKnown RBP17.6■□□□□ 0.41
HMGA1-202ENST00000347617 KDM7AQ6ZMT4 941 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms