RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CCDC25Q86WR0 208 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 MTRQ99707 1265 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 DPH5Q9H2P9 285 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 LTN1O94822 1766 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 GOLGA6L10A6NI86 522 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 TPH2Q8IWU9 490 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 THRAP3Q9Y2W1 955 aaKnown RBP13.22□□□□□ -0.29
USP1-201ENST00000339950 SETD1AO15047 1707 aaKnown RBP13.22□□□□□ -0.29
USP1-201ENST00000339950 SHTN1A0MZ66 631 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 LRRC53A6NM62 1247 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 USP17L10C9JJH3 530 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 KCNK3O14649 394 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 AKR1B1P15121 316 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 CYP2J2P51589 502 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 IFFO1Q0D2I5 559 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 CCDC93Q567U6 631 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 SH2D3CQ8N5H7 860 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 LARP4BQ92615 738 aaKnown RBP13.22□□□□□ -0.29
USP1-201ENST00000339950 DDX12PQ92771 950 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 KRT12Q99456 494 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 AP1M1Q9BXS5 423 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 IL17RBQ9NRM6 502 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 CCDC151A5D8V7 595 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 KRT25Q7Z3Z0 450 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 PIGOQ8TEQ8 1089 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 CTNNBL1Q8WYA6 563 aaPredicted RBP13.22□□□□□ -0.29
USP1-201ENST00000339950 NUDT12Q9BQG2 462 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 BRIP1Q9BX63 1249 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 PSTPIP2Q9H939 334 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 PCDHA1Q9Y5I3 950 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 PNPLA7Q6ZV29 1317 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 POTEB3A0JP26 581 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 POTECB2RU33 542 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 TBCAO75347 108 aaKnown RBP13.22□□□□□ -0.29
USP1-201ENST00000339950 GCNT3O95395 438 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 HLA-DOAP06340 250 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 POTEBQ6S5H4 581 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 CEP57Q86XR8 500 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 EHD4Q9H223 541 aa13.22□□□□□ -0.29
USP1-201ENST00000339950 DDX25Q9UHL0 483 aaKnown RBP13.22□□□□□ -0.29
USP1-201ENST00000339950 CAMTA1Q9Y6Y1 1673 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 CYTH3O43739 400 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 HSF2BPO75031 334 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 PRPF6O94906 941 aaKnown RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 CCDC84Q86UT8 332 aaPredicted RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 ZNF579Q8NAF0 562 aaKnown RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 COG1Q8WTW3 980 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 HAUS4Q9H6D7 363 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 PANK4Q9NVE7 773 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 CLRN2A0PK11 232 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 SPDYE3A6NKU9 549 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 POTEB2H3BUK9 544 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 KRT13P13646 458 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 CKAP4Q07065 602 aaKnown RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 BRD3Q15059 726 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 FAM76AQ8TAV0 307 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 ZNF384Q8TF68 577 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 HDAC7Q8WUI4 952 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 UBLCP1Q8WVY7 318 aaPredicted RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 MRRFQ96E11 262 aaKnown RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 NAA15Q9BXJ9 866 aaKnown RBP13.21□□□□□ -0.29
USP1-201ENST00000339950 NDST4Q9H3R1 872 aa13.21□□□□□ -0.29
USP1-201ENST00000339950 LRRN2O75325 713 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 ACTN1P12814 892 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 CYP2C19P33261 490 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 GGCXP38435 758 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 KIF11P52732 1056 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 FAM26FQ5R3K3 315 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 IQCEQ6IPM2 695 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 TMEM139Q8IV31 216 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 FUT8Q9BYC5 575 aa13.21□□□□□ -0.3
USP1-201ENST00000339950 PPANQ9NQ55 473 aaKnown RBP13.21□□□□□ -0.3
USP1-201ENST00000339950 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.21□□□□□ -0.3
USP1-201ENST00000339950 FMN2Q9NZ56 1722 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 ZSCAN5CA6NGD5 496 aaPredicted RBP13.2□□□□□ -0.3
USP1-201ENST00000339950 ADAM9Q13443 819 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 SHROOM1Q2M3G4 852 aaPredicted RBP13.2□□□□□ -0.3
USP1-201ENST00000339950 CFAP58Q5T655 872 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 C12orf60Q5U649 245 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 EPB41L5Q9HCM4 733 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 POTEFA5A3E0 1075 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 LGALS16A8MUM7 142 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 TRIM37O94972 964 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 POTEIP0CG38 1075 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 CCNE1P24864 410 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 GPSM2P81274 684 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 POTEGQ6S5H5 508 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 POTEEQ6S8J3 1075 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 MYOCDQ8IZQ8 938 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 ELMO3Q96BJ8 720 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 LRRC1Q9BTT6 524 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 LUC7LQ9NQ29 371 aaKnown RBP13.2□□□□□ -0.3
USP1-201ENST00000339950 BUB1BO60566 1050 aaPredicted RBP13.2□□□□□ -0.3
USP1-201ENST00000339950 ADCY1Q08828 1119 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 PPP2R5BQ15173 497 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 PYM1Q9BRP8 204 aaKnown RBP13.2□□□□□ -0.3
USP1-201ENST00000339950 TRIM9Q9C026 710 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 USP21Q9UK80 565 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 NFU1Q9UMS0 254 aa13.2□□□□□ -0.3
USP1-201ENST00000339950 WDR19Q8NEZ3 1342 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms