RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 ARID5BQ14865 1188 aa25.24■■□□□ 1.63
PDLIM2-203ENST00000339162 APOBEC3FQ8IUX4 373 aaKnown RBP25.24■■□□□ 1.63
PDLIM2-203ENST00000339162 SNX29Q8TEQ0 813 aa25.24■■□□□ 1.63
PDLIM2-203ENST00000339162 PNMA5Q96PV4 448 aa25.24■■□□□ 1.63
PDLIM2-203ENST00000339162 RAB34Q9BZG1 259 aa25.24■■□□□ 1.63
PDLIM2-203ENST00000339162 GDAQ9Y2T3 454 aa25.24■■□□□ 1.63
PDLIM2-203ENST00000339162 FAM86B1E9PN63 330 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 FAM86B2P0C5J1 330 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 PDIA5Q14554 519 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 PTPN21Q16825 1174 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 LDHDQ86WU2 507 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 AGBL1Q96MI9 1066 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 SYT17Q9BSW7 474 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 KIAA1683Q9H0B3 1180 aa25.23■■□□□ 1.63
PDLIM2-203ENST00000339162 PLA2G6O60733 806 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 FOSP01100 380 aaPredicted RBP25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 ERCC5P28715 1186 aaPredicted RBP25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 SPP2Q13103 211 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 PRKG1Q13976 671 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 DCAF15Q66K64 600 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 CYP2W1Q8TAV3 490 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 TANGO6Q9C0B7 1094 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 SREBF1P36956 1147 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 CDK5RAP3Q96JB5 506 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 RNF181Q9P0P0 153 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 PYCARDQ9ULZ3 195 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 CTNND2Q9UQB3 1225 aa25.22■■□□□ 1.63
PDLIM2-203ENST00000339162 CYP3A7-CYP3A51PA0A087WV96 503 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 CYP3A7P24462 503 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 UBASH3AP57075 661 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 UBXN2AP68543 259 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 ECM1Q16610 540 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 KMT5BQ4FZB7 885 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 KRT79Q5XKE5 535 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 NAP1L5Q96NT1 182 aaPredicted RBP25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 NAP1L4Q99733 375 aaKnown RBP25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 KCNMB3Q9NPA1 279 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 PIK3CDO00329 1044 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 WDR46O15213 610 aaKnown RBP25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 KLRC4O43908 158 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 ZNF500O60304 480 aaPredicted RBP25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 ZNF658Q5TYW1 1059 aaPredicted RBP25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 CUEDC2Q9H467 287 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 EMILIN3Q9NT22 766 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 BLOC1S4Q9NUP1 217 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 RMND1Q9NWS8 449 aa25.21■■□□□ 1.63
PDLIM2-203ENST00000339162 SYNRGQ9UMZ2 1314 aa25.2■■□□□ 1.63
PDLIM2-203ENST00000339162 TPM3P06753 285 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 YBX3P16989 372 aaKnown RBP eCLIP25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 CDK11BP21127 795 aaKnown RBP25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 STAT3P40763 770 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 KCNK18Q7Z418 384 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 SCYL3Q8IZE3 742 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 CPXCR1Q8N123 301 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 CACTINQ8WUQ7 758 aaKnown RBP25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 LPAR1Q92633 364 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 SLF1Q9BQI6 1058 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 GCOM1H8Y6P7 765 aaPredicted RBP25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 POLR2MP0CAP2 368 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 VCAM1P19320 739 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 MCM6Q14566 821 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 TMC6Q7Z403 805 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 PRPF38AQ8NAV1 312 aaKnown RBP25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 LENG9Q96B70 501 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 ZFP91Q96JP5 570 aaPredicted RBP25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 MBOAT7Q96N66 472 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 TRIM9Q9C026 710 aa25.2■■□□□ 1.62
PDLIM2-203ENST00000339162 ZNF536O15090 1300 aa25.19■■□□□ 1.62
PDLIM2-203ENST00000339162 ZNF18P17022 549 aa25.19■■□□□ 1.62
PDLIM2-203ENST00000339162 TRAF1Q13077 416 aa25.19■■□□□ 1.62
PDLIM2-203ENST00000339162 MCTP2Q6DN12 878 aa25.19■■□□□ 1.62
PDLIM2-203ENST00000339162 CCPG1Q9ULG6 757 aa25.19■■□□□ 1.62
PDLIM2-203ENST00000339162 MRPL11Q9Y3B7 192 aaKnown RBP25.19■■□□□ 1.62
PDLIM2-203ENST00000339162 FLOT1O75955 427 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 PRCPP42785 496 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 ZNF112Q9UJU3 913 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 SBF1O95248 1867 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 PTPRAP18433 802 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 ZNF76P36508 570 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 ETNPPLQ8TBG4 499 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 PICK1Q9NRD5 415 aa25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 DICER1Q9UPY3 1922 aaKnown RBP25.18■■□□□ 1.62
PDLIM2-203ENST00000339162 ASIC1P78348 528 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 SPATA1Q5VX52 437 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 MOXD1Q6UVY6 613 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 LARP4BQ92615 738 aaKnown RBP25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 HOOK2Q96ED9 719 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 RPAP3Q9H6T3 665 aaPredicted RBP25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 MAGEF1Q9HAY2 307 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 GINM1Q9NU53 330 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 ZHX2Q9Y6X8 837 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 ICAM1P05362 532 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 MYL1P05976 194 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 Q4G0T1 1027 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 SV2BQ7L1I2 683 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 RAVER2Q9HCJ3 691 aaKnown RBP25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 HOMER2Q9NSB8 354 aa25.17■■□□□ 1.62
PDLIM2-203ENST00000339162 CCT6AP40227 531 aaKnown RBP25.16■■□□□ 1.62
PDLIM2-203ENST00000339162 CT47A1Q5JQC4 288 aaPredicted RBP25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms