RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CXCL17Q6UXB2 119 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 VTI1AQ96AJ9 217 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 RMDN3Q96TC7 470 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 LBHD1Q9BQE6 289 aaPredicted RBP18.92■□□□□ 0.62
LSM1-201ENST00000311351 ELP1O95163 1332 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 HOXA13P31271 388 aaPredicted RBP18.91■□□□□ 0.62
LSM1-201ENST00000311351 HSD17B4P51659 736 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 GHRHRQ02643 423 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 PPP2R5BQ15173 497 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 TDHQ8IZJ6 230 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 COPS5Q92905 334 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 NEK1Q96PY6 1258 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 MAP3K14Q99558 947 aa18.91■□□□□ 0.62
LSM1-201ENST00000311351 PNMA6FA0A0J9YX94 578 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 A0A0U1RQG5 324 aaPredicted RBP18.9■□□□□ 0.62
LSM1-201ENST00000311351 ARIH2O95376 493 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 ITGB8P26012 769 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 KIF5BP33176 963 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 LIFRP42702 1097 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 ANKRD33Q7Z3H0 272 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 CMTR1Q8N1G2 835 aaKnown RBP18.9■□□□□ 0.62
LSM1-201ENST00000311351 OR6J1Q8NGC5 347 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 NSUN6Q8TEA1 469 aaKnown RBP18.9■□□□□ 0.62
LSM1-201ENST00000311351 SCFD2Q8WU76 684 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 BADQ92934 168 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 SPZ1Q9BXG8 430 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 MAF1Q9H063 256 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 PXMP2Q9NR77 195 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 Q9Y3F1 56 aa18.9■□□□□ 0.62
LSM1-201ENST00000311351 B4DLN1 442 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 CDK7P50613 346 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 MRPL12P52815 198 aaKnown RBP18.89■□□□□ 0.61
LSM1-201ENST00000311351 FAAP100Q0VG06 881 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 ARHGEF16Q5VV41 709 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 MICU3Q86XE3 530 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 TMTC2Q8N394 836 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 SRBD1Q8N5C6 995 aaKnown RBP18.89■□□□□ 0.61
LSM1-201ENST00000311351 LRCH3Q96II8 777 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 SLC12A7Q9Y666 1083 aa18.89■□□□□ 0.61
LSM1-201ENST00000311351 DCDC2CA8MYV0 355 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 ARVCFO00192 962 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 ZEB2O60315 1214 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 TXNP10599 105 aaKnown RBP18.88■□□□□ 0.61
LSM1-201ENST00000311351 PSMC6P62333 389 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 SEPT14Q6ZU15 432 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 SGMS1Q86VZ5 419 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 IL31RAQ8NI17 732 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 TOX2Q96NM4 488 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 TMEM39AQ9NV64 488 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 SCN10AQ9Y5Y9 1956 aa18.88■□□□□ 0.61
LSM1-201ENST00000311351 KIAA0355O15063 1070 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 GRIN2DO15399 1336 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 NR3C2P08235 984 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 CPA1P15085 419 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 EXOSC10Q01780 885 aaKnown RBP18.87■□□□□ 0.61
LSM1-201ENST00000311351 TTLL4Q14679 1199 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 TSGA10IPQ3SY00 556 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 MROH7Q68CQ1 1323 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 FAM126BQ8IXS8 530 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 RRP36Q96EU6 259 aaKnown RBP18.87■□□□□ 0.61
LSM1-201ENST00000311351 IWS1Q96ST2 819 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 PDCD2LQ9BRP1 358 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 TBX21Q9UL17 535 aa18.87■□□□□ 0.61
LSM1-201ENST00000311351 hCG_1642624A0A1W2PR95 340 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 GCOM1H8Y6P7 765 aaPredicted RBP18.86■□□□□ 0.61
LSM1-201ENST00000311351 NKRFO15226 690 aaKnown RBP eCLIP18.86■□□□□ 0.61
LSM1-201ENST00000311351 CABYRO75952 493 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 MYL3P08590 195 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 POLR2MP0CAP2 368 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 CALM1P0DP23 149 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 CALM2P0DP24 149 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 CALM3P0DP25 149 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 RAG1P15918 1043 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 GNAQP50148 359 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 CPT1AP50416 773 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 TRAF1Q13077 416 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 KRT32Q14532 448 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 STXBP2Q15833 593 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 CCDC62Q6P9F0 684 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 APOA5Q6Q788 366 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 TMTC3Q6ZXV5 915 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 DHX32Q7L7V1 743 aaKnown RBP18.86■□□□□ 0.61
LSM1-201ENST00000311351 FCHSD1Q86WN1 690 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 PPP4R2Q9NY27 417 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 SEC63Q9UGP8 760 aaKnown RBP18.86■□□□□ 0.61
LSM1-201ENST00000311351 MYH7BA7E2Y1 1941 aa18.86■□□□□ 0.61
LSM1-201ENST00000311351 MYCLP12524 364 aaPredicted RBP18.85■□□□□ 0.61
LSM1-201ENST00000311351 HSPA4P34932 840 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 PURAQ00577 322 aaKnown RBP18.85■□□□□ 0.61
LSM1-201ENST00000311351 ITGA7Q13683 1181 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 PGM5Q15124 567 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 LY6KQ17RY6 165 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 C9orf50Q5SZB4 431 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 CCDC82Q8N4S0 544 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 SLC43A3Q8NBI5 491 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 ZFP91Q96JP5 570 aaPredicted RBP18.85■□□□□ 0.61
LSM1-201ENST00000311351 LZTS2Q9BRK4 669 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 MAP3K20Q9NYL2 800 aaKnown RBP18.85■□□□□ 0.61
LSM1-201ENST00000311351 BRPF3Q9ULD4 1205 aa18.85■□□□□ 0.61
LSM1-201ENST00000311351 SNX14Q9Y5W7 946 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms