RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 TPX2Q9ULW0 747 aaKnown RBP12.05□□□□□ -0.48
ZNF558-201ENST00000301475 PLAAQ9Y263 795 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 MYH3P11055 1940 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 COL18A1P39060 1754 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 A0A0G2JS52 829 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 MINDY4BA8MYZ0 360 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 HMGB1P1B2RPK0 211 aaPredicted RBP12.05□□□□□ -0.48
ZNF558-201ENST00000301475 LONP1P36776 959 aaKnown RBP12.05□□□□□ -0.48
ZNF558-201ENST00000301475 TRIM28Q13263 835 aaKnown RBP12.05□□□□□ -0.48
ZNF558-201ENST00000301475 DRP2Q13474 957 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 CCDC121Q6ZUS5 278 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 TMTC3Q6ZXV5 915 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 MAATS1Q7Z4T9 603 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 LPIN2Q92539 896 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 ZNF622Q969S3 477 aaKnown RBP eCLIP12.05□□□□□ -0.483e-6■□□□□ 9.7
ZNF558-201ENST00000301475 RNF41Q9H4P4 317 aaPredicted RBP12.05□□□□□ -0.48
ZNF558-201ENST00000301475 SLC12A6Q9UHW9 1150 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 FAM205AQ6ZU69 1335 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 PNPLA7Q6ZV29 1317 aa12.05□□□□□ -0.48
ZNF558-201ENST00000301475 AKR1B10O60218 316 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 TRAPPC10P48553 1259 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 CDR1P51861 262 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 MRPL12P52815 198 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 BYSLQ13895 437 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 PPP2R5BQ15173 497 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 ANKRD20A8PQ5CZ79 823 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 NOC3LQ8WTT2 800 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 P2RX5Q93086 422 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 BTG4Q9NY30 223 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 SIK3Q9Y2K2 1263 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 ARAP2Q8WZ64 1704 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 XIRP1Q702N8 1843 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 ANKRD18BA2A2Z9 1011 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 GCFC2P16383 781 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 PAX7P23759 505 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 CCNE1P24864 410 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 SLC1A4P43007 532 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 CTSWP56202 376 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 GFPT1Q06210 699 aaPredicted RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 E2F5Q15329 346 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 CFAP221Q4G0U5 840 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 SRBD1Q8N5C6 995 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 C1orf131Q8NDD1 294 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 OR2W6PQ8NHA6 318 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 ESR2Q92731 530 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 SGSM3Q96HU1 749 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 ZSCAN10Q96SZ4 725 aaPredicted RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 KRT12Q99456 494 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 TMBIM4Q9HC24 238 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 DUOX1Q9NRD9 1551 aa12.04□□□□□ -0.48
ZNF558-201ENST00000301475 BAZ2AQ9UIF9 1905 aaKnown RBP12.04□□□□□ -0.48
ZNF558-201ENST00000301475 LRRC53A6NM62 1247 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 SRRM3A6NNA2 597 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 PJA2O43164 708 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 FGFR2P21802 821 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 MAGEA1P43355 309 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 NLRP5P59047 1200 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 RASSF7Q02833 373 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 STK4Q13043 487 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 IFIT1BQ5T764 474 aaKnown RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 ARL6IP4Q66PJ3 421 aaKnown RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 ADGRA1Q86SQ6 560 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 RASSF8Q8NHQ8 419 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 DHTKD1Q96HY7 919 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 SCLT1Q96NL6 688 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 ACTR5Q9H9F9 607 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 KBTBD4Q9NVX7 518 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 MYH1P12882 1939 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 COL22A1Q8NFW1 1626 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 CYP2D7A0A087X1C5 515 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 CLSTN1O94985 981 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 FCER1AP12319 257 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 PUM3Q15397 648 aaKnown RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 PPP4R3AQ6IN85 833 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 CATIPQ7Z7H3 387 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 KIRREL3Q8IZU9 778 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 RASGRP4Q8TDF6 673 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 TMEM60Q9H2L4 133 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 PAPPAQ13219 1627 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 FRMD3A2A2Y4 597 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 RAD51CO43502 376 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 GNAT2P19087 354 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 TMOD1P28289 359 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 HSPA9P38646 679 aaKnown RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 PPP2R5AQ15172 486 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 UAP1Q16222 522 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 KCTD19Q17RG1 926 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 ASTE1Q2TB18 679 aaPredicted RBP12.03□□□□□ -0.48
ZNF558-201ENST00000301475 WHAMMQ8TF30 809 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 LEMD3Q9Y2U8 911 aa12.03□□□□□ -0.48
ZNF558-201ENST00000301475 GOLGA6L7A0A1B0GV03 622 aa12.02□□□□□ -0.49
ZNF558-201ENST00000301475 TRAPPC3O43617 180 aa12.02□□□□□ -0.49
ZNF558-201ENST00000301475 FTCDO95954 541 aa12.02□□□□□ -0.49
ZNF558-201ENST00000301475 ECHS1P30084 290 aa12.02□□□□□ -0.49
ZNF558-201ENST00000301475 RNASE9P60153 205 aaKnown RBP12.02□□□□□ -0.49
ZNF558-201ENST00000301475 CCDC178Q5BJE1 867 aa12.02□□□□□ -0.49
ZNF558-201ENST00000301475 HPS3Q969F9 1004 aa12.02□□□□□ -0.49
ZNF558-201ENST00000301475 INPP4AQ96PE3 977 aaPredicted RBP12.02□□□□□ -0.49
ZNF558-201ENST00000301475 NOX5Q96PH1 765 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms