RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 F12P00748 615 aaPredicted RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 HMGB1P09429 215 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 CYP2C8P10632 490 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 ADD1P35611 737 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 SLC1A4P43007 532 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 METAP2P50579 478 aaKnown RBP eCLIP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 BACE1P56817 501 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 KIF23Q02241 960 aaPredicted RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 PPATQ06203 517 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 ZNF543Q08ER8 600 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 TROAPQ12815 778 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 IKQ13123 557 aaPredicted RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 SART3Q15020 963 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 CCDC174Q6PII3 467 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 TMTC3Q6ZXV5 915 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 CATIPQ7Z7H3 387 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 DGKHQ86XP1 1220 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 HOMER1Q86YM7 354 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 SRBD1Q8N5C6 995 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 ANKS1AQ92625 1134 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 GPKOWQ92917 476 aaPredicted RBP eCLIP7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 GTF3C6Q969F1 213 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 SHISA4Q96DD7 197 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 DDX11Q96FC9 970 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 TMX3Q96JJ7 454 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 PTPN18Q99952 460 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 KIAA1683Q9H0B3 1180 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 AS3MTQ9HBK9 375 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 MAD2L2Q9UI95 211 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 NID2Q14112 1375 aa7.56□□□□□ -1.2
DEPDC4-201ENST00000299185 RLFQ13129 1914 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 PTPDC1A2A3K4 754 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 RASSF10A6NK89 507 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 TRIM66O15016 1216 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 DHX16O60231 1041 aaKnown RBP7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 PFKFB2O60825 505 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 EIF5BO60841 1220 aaKnown RBP7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 PPP1R11O60927 126 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 FLOT1O75955 427 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 PARP1P09874 1014 aaKnown RBP7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 SNHG28P0DPA3 235 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 BMP3P12645 472 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 FSHRP23945 695 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 LIFRP42702 1097 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 SNAPC2Q13487 334 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 OTUD7BQ6GQQ9 843 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 VASH1Q7L8A9 365 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 HSCBQ8IWL3 235 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 GMCL1P1Q8NEA9 526 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 DCAF4Q8WV16 495 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 C12orf42Q96LP6 360 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 PIGSQ96S52 555 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 C1QTNF2Q9BXJ5 285 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 VAT1LQ9HCJ6 419 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 GOPCQ9HD26 462 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 GJB4Q9NTQ9 266 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 TMOD4Q9NZQ9 345 aa7.55□□□□□ -1.2
DEPDC4-201ENST00000299185 SLC35F4A4IF30 521 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 PALM3A6NDB9 673 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 K7ELQ4 463 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 MSTNO14793 375 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 WDR46O15213 610 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 CNMDO75829 334 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 CDC37Q16543 378 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 AMHR2Q16671 573 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 DEFB115Q30KQ5 88 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 SH3D19Q5HYK7 790 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 SYDE2Q5VT97 1194 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 TRMT44Q8IYL2 757 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 CCDC116Q8IYX3 515 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 VWA5B2Q8N398 1253 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 NSUN7Q8NE18 718 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 CTCFLQ8NI51 663 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 MKL1Q969V6 931 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 GMCL1Q96IK5 515 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 PAGR1Q9BTK6 254 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 SLC26A6Q9BXS9 759 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 ASCC2Q9H1I8 757 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 SLKQ9H2G2 1235 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 SH2D4AQ9H788 454 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 TXNRD2Q9NNW7 524 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 ENAMQ9NRM1 1142 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 GINM1Q9NU53 330 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 PRR12Q9ULL5 1215 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 LIMCH1Q9UPQ0 1083 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 AGTPBP1Q9UPW5 1226 aa7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 COL11A1P12107 1806 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-201ENST00000299185 ADGRA2Q96PE1 1338 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 WDR33Q9C0J8 1336 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 KLRF2D3W0D1 207 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 PDHXO00330 501 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 CXCL11O14625 94 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 SPINT1O43278 529 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 ZBTB48P10074 688 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 CETPP11597 493 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 GTF2A2P52657 109 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 USP14P54578 494 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 EVCP57679 992 aa7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 IRX3P78415 501 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-201ENST00000299185 CAP1Q01518 475 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms