RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 KCNK3O14649 394 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 MAP3K7CLP57077 242 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 SLFNL1Q499Z3 407 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 CCDC124Q96CT7 223 aaKnown RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 RNF26Q9BY78 433 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 MROH1Q8NDA8 1641 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 F8W031 263 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 TRPA1O75762 1119 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 DNM2P50570 870 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 MUM1L1Q5H9M0 696 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 TMTC3Q6ZXV5 915 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 TCP11Q8WWU5 503 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 IWS1Q96ST2 819 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 NT5C3AQ9H0P0 336 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 FAM207AQ9NSI2 230 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 SAP30BPQ9UHR5 308 aaKnown RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 CREB3O43889 395 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 ADD1P35611 737 aaKnown RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 STRN3Q13033 797 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 PDE4DIPQ5VU43 2346 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 OGFOD1Q8N543 542 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 HAUS4Q9H6D7 363 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 TYW1Q9NV66 732 aaKnown RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 EEF1GP26641 437 aaKnown RBP10.75□□□□□ -0.69
COL6A3-201ENST00000295550 PCYT1AP49585 367 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 DNAJC10Q8IXB1 793 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 ZBBXA8MT70 800 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 GNPATO15228 680 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 MMP1P03956 469 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 RAP1GDS1P52306 607 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 CABP7Q86V35 215 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 STAM2O75886 525 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 MAGEA1P43355 309 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 CLIC6Q96NY7 704 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 POLE2P56282 527 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 CDAN1Q8IWY9 1227 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 ANLNQ9NQW6 1124 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 TSC22D3Q99576 134 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 MYH11P35749 1972 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 RESP18Q5W5W9 173 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 FTOQ9C0B1 505 aaKnown RBP eCLIP10.74□□□□□ -0.69
COL6A3-201ENST00000295550 PASKQ96RG2 1323 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 HEG1Q9ULI3 1381 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 UFL1O94874 794 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 PANX2Q96RD6 677 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 JAG2Q9Y219 1238 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 GCNT3O95395 438 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 ATF2P15336 505 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 IL9RQ01113 521 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 ZNF827Q17R98 1081 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 SNX29Q8TEQ0 813 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 ANGPTL2Q9UKU9 493 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 MYL1P05976 194 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 ATF7P17544 494 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-201ENST00000295550 INTUQ9ULD6 942 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 DIP2BQ9P265 1576 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 CPS1P31327 1500 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 TAF11Q15544 211 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 FAM133BQ5BKY9 247 aaKnown RBP10.74□□□□□ -0.69
COL6A3-201ENST00000295550 KCTD16Q68DU8 428 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 ZBTB12Q9Y330 459 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-201ENST00000295550 HYOU1Q9Y4L1 999 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 SKIP12755 728 aa10.74□□□□□ -0.69
COL6A3-201ENST00000295550 DLG5Q8TDM6 1919 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 BTBD18B2RXH4 712 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 DDIT3P35638 169 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 CDR2Q01850 454 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 ZC3H18Q86VM9 953 aaKnown RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 NUDCD3Q8IVD9 361 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 DCLK2Q8N568 766 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 KRT10P13645 584 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 IL1RL1Q01638 556 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 ZKSCAN8Q15776 578 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 GRAMD4Q6IC98 578 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 TRIM56Q9BRZ2 755 aaKnown RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 NACA2Q9H009 215 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 RNASELQ05823 741 aaKnown RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 ARHGEF35A5YM69 484 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 SASH1O94885 1247 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 PTPN12Q05209 780 aaKnown RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 TMTC4Q5T4D3 741 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 HDAC11Q96DB2 347 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 RWDD2AQ9UIY3 292 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 hCG_1642624A0A1W2PR95 340 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 ST13P4Q8IZP2 240 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 U2AF1L4Q8WU68 220 aaKnown RBP10.73□□□□□ -0.69
COL6A3-201ENST00000295550 HAUS1Q96CS2 278 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 PDE8BO95263 885 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 ADD2P35612 726 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 TXKP42681 527 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 E2F4Q16254 413 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 EYA3Q99504 573 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 CCDC68Q9H2F9 335 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 CDC23Q9UJX2 597 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 JRKLQ9Y4A0 524 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 FAM170AA1A519 330 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 PRAMEF22A3QJZ6 481 aa10.73□□□□□ -0.69
COL6A3-201ENST00000295550 CASP14P31944 242 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms