RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TMX4Q9H1E5 349 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 DDX25Q9UHL0 483 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 CAPN11Q9UMQ6 739 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 FHOD1Q9Y613 1164 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 DDTLA6NHG4 134 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 RASSF10A6NK89 507 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L15C9J2P7 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L13C9JLJ4 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L11C9JVI0 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L18D6R9N7 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L22D6RA61 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L17D6RBQ6 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L19D6RCP7 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L20D6RJB6 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 ZBTB5O15062 677 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L24Q0WX57 530 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 ORC2Q13416 577 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 WDR59Q6PJI9 974 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 USP17L6PQ6QN14 398 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 ZSCAN29Q8IWY8 852 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 NOC3LQ8WTT2 800 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 PSTPIP2Q9H939 334 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 GUCA1BQ9UMX6 200 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 MARCH6O60337 910 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 KRT79Q5XKE5 535 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 TMCO3Q6UWJ1 677 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 GLIS3Q8NEA6 775 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 DNAJC7Q99615 494 aa20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 ARGLU1Q9NWB6 273 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-201ENST00000291842 CTAGE9A4FU28 777 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 CLK2P49760 499 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 SNAP25P60880 206 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 MIIPQ5JXC2 388 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 HAS1Q92839 578 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 FAM53CQ9NYF3 392 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 EEF2P13639 858 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 PDE6BP35913 854 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 SEMA3FQ13275 785 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 LRRC41Q15345 812 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 TSR1Q2NL82 804 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 GPATCH4Q5T3I0 446 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 RAD54LQ92698 747 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 DDX12PQ92771 950 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 MASTLQ96GX5 879 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 RAB34Q9BZG1 259 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 STK17AQ9UEE5 414 aa20.49■□□□□ 0.87
SHKBP1-201ENST00000291842 MYH4Q9Y623 1939 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 PNMA6AP0CW24 399 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 MRPL12P52815 198 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 BMS1Q14692 1282 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 GOLGA1Q92805 767 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 PARD6BQ9BYG5 372 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 CDC23Q9UJX2 597 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 CHMP4BP1P59074 171 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 DMTNQ08495 405 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 PDIA5Q14554 519 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 UNC13DQ70J99 1090 aa20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 GPR161Q8N6U8 529 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-201ENST00000291842 SLC1A4P43007 532 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 QRICH1Q2TAL8 776 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 PPP4R3AQ6IN85 833 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 GPIHBP1Q8IV16 184 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 FAM114A1Q8IWE2 563 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 TTYH3Q9C0H2 523 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 QSER1Q2KHR3 1735 aa20.47■□□□□ 0.87
SHKBP1-201ENST00000291842 ZRANB2O95218 330 aaKnown RBP eCLIP20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 APBA3O96018 575 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 SSBP05455 408 aaKnown RBP eCLIP20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 CERKLQ49MI3 558 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 CENPPQ6IPU0 288 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 PPP1R18Q6NYC8 613 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 SRGAP1Q7Z6B7 1085 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 AKT1S1Q96B36 256 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 ZDHHC15Q96MV8 337 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 FAM198AQ9UFP1 575 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 PCDHA1Q9Y5I3 950 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 MYO3BQ8WXR4 1341 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 MYH7BA7E2Y1 1941 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 HERVK_113P62684 666 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 SH3BP5LQ7L8J4 393 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 NAPGQ99747 312 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 PCDHA12Q9UN75 941 aa20.46■□□□□ 0.87
SHKBP1-201ENST00000291842 GDF11O95390 407 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 SEPT2Q15019 361 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 PODNQ7Z5L7 613 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 RABGGTAQ92696 567 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 COL11A2P13942 1736 aaPredicted RBP20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 PVALEFA0A1B0GWK0 134 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 TMEM119Q4V9L6 283 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 SLFN13Q68D06 897 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 MTMR8Q96EF0 704 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 TBC1D7Q9P0N9 293 aa20.45■□□□□ 0.86
SHKBP1-201ENST00000291842 ENC1O14682 589 aa20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 TAL1P17542 331 aaPredicted RBP20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 C2CD5Q86YS7 1000 aa20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 CCDC17Q96LX7 622 aa20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 EHD4Q9H223 541 aa20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 ECE2O60344 883 aa20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 PPP1R2P41236 205 aa20.44■□□□□ 0.86
SHKBP1-201ENST00000291842 CDC37Q16543 378 aaPredicted RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms