RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FAM198AQ9UFP1 575 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 DDX25Q9UHL0 483 aaKnown RBP22.44■■□□□ 1.18
VPS53-201ENST00000291074 BICDL2A1A5D9 508 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 TEX35Q5T0J7 233 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 CNNM4Q6P4Q7 775 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 PODNQ7Z5L7 613 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 ZSCAN29Q8IWY8 852 aaPredicted RBP22.43■■□□□ 1.18
VPS53-201ENST00000291074 NOC3LQ8WTT2 800 aaKnown RBP22.43■■□□□ 1.18
VPS53-201ENST00000291074 HAS1Q92839 578 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 PSTPIP2Q9H939 334 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 STK17AQ9UEE5 414 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L15C9J2P7 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L13C9JLJ4 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L11C9JVI0 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L18D6R9N7 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L22D6RA61 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L17D6RBQ6 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L19D6RCP7 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L20D6RJB6 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 ARHGAP25P42331 645 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L24Q0WX57 530 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 USP17L6PQ6QN14 398 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 C2CD5Q86YS7 1000 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 SLC35F6Q8N357 371 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 EHD4Q9H223 541 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 ZSWIM4Q9H7M6 989 aa22.43■■□□□ 1.18
VPS53-201ENST00000291074 LUC7L2Q9Y383 392 aaKnown RBP22.43■■□□□ 1.18
VPS53-201ENST00000291074 REXO2Q9Y3B8 237 aaKnown RBP22.43■■□□□ 1.18
VPS53-201ENST00000291074 MTIF2P46199 727 aaKnown RBP22.42■■□□□ 1.18
VPS53-201ENST00000291074 DNM2P50570 870 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 OR8K1Q8NGG5 319 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 RAD54LQ92698 747 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 MTMR8Q96EF0 704 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 ZNF646O15015 1829 aaPredicted RBP22.42■■□□□ 1.18
VPS53-201ENST00000291074 RASSF10A6NK89 507 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 TFRCP02786 760 aaKnown RBP22.42■■□□□ 1.18
VPS53-201ENST00000291074 QRICH1Q2TAL8 776 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 KRT79Q5XKE5 535 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 GLIS3Q8NEA6 775 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 AGPAT5Q9NUQ2 364 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 TRIM10Q9UDY6 481 aa22.42■■□□□ 1.18
VPS53-201ENST00000291074 ECE2O60344 883 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 IDEP14735 1019 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 MRPL12P52815 198 aaKnown RBP22.41■■□□□ 1.18
VPS53-201ENST00000291074 MIIPQ5JXC2 388 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 DACT2Q5SW24 774 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 PPP4R3AQ6IN85 833 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 WDR59Q6PJI9 974 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 DNAJC7Q99615 494 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 RAB34Q9BZG1 259 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 CAPN11Q9UMQ6 739 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 ZSCAN20P17040 1043 aaPredicted RBP22.41■■□□□ 1.18
VPS53-201ENST00000291074 SNAP25P60880 206 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 TBC1D8BQ0IIM8 1120 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 CERKLQ49MI3 558 aaPredicted RBP22.41■■□□□ 1.18
VPS53-201ENST00000291074 UNC13DQ70J99 1090 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 CCDC17Q96LX7 622 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 TFR2Q9UP52 801 aa22.41■■□□□ 1.18
VPS53-201ENST00000291074 EPN1Q9Y6I3 576 aaPredicted RBP22.41■■□□□ 1.18
VPS53-201ENST00000291074 NDUFA10O95299 355 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 PDIA5Q14554 519 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 SEPT2Q15019 361 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 NOC4LQ9BVI4 516 aaKnown RBP22.4■■□□□ 1.18
VPS53-201ENST00000291074 GDF11O95390 407 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 SLC1A4P43007 532 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 TMEM119Q4V9L6 283 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 RSRC2Q7L4I2 434 aaKnown RBP22.4■■□□□ 1.18
VPS53-201ENST00000291074 TTYH3Q9C0H2 523 aa22.4■■□□□ 1.18
VPS53-201ENST00000291074 MARCH6O60337 910 aa22.39■■□□□ 1.18
VPS53-201ENST00000291074 TRIM21P19474 475 aaKnown RBP22.39■■□□□ 1.18
VPS53-201ENST00000291074 HMGB2P26583 209 aaKnown RBP22.39■■□□□ 1.18
VPS53-201ENST00000291074 CHRNA5P30532 468 aa22.39■■□□□ 1.18
VPS53-201ENST00000291074 SLFN13Q68D06 897 aa22.39■■□□□ 1.18
VPS53-201ENST00000291074 DDX12PQ92771 950 aa22.39■■□□□ 1.18
VPS53-201ENST00000291074 PLSCR1O15162 318 aa22.39■■□□□ 1.17
VPS53-201ENST00000291074 LRRC41Q15345 812 aa22.39■■□□□ 1.17
VPS53-201ENST00000291074 KIF4BQ2VIQ3 1234 aa22.39■■□□□ 1.17
VPS53-201ENST00000291074 CENPPQ6IPU0 288 aa22.39■■□□□ 1.17
VPS53-201ENST00000291074 SIAH1Q8IUQ4 282 aa22.39■■□□□ 1.17
VPS53-201ENST00000291074 PCMTD1Q96MG8 357 aaPredicted RBP22.39■■□□□ 1.17
VPS53-201ENST00000291074 PUF60Q9UHX1 559 aaKnown RBP22.39■■□□□ 1.17
VPS53-201ENST00000291074 ATF5Q9Y2D1 282 aaPredicted RBP22.39■■□□□ 1.17
VPS53-201ENST00000291074 PCDHA1Q9Y5I3 950 aa22.39■■□□□ 1.17
VPS53-201ENST00000291074 ERCC3P19447 782 aa22.38■■□□□ 1.17
VPS53-201ENST00000291074 CDC37Q16543 378 aaPredicted RBP22.38■■□□□ 1.17
VPS53-201ENST00000291074 STRIP1Q5VSL9 837 aa22.38■■□□□ 1.17
VPS53-201ENST00000291074 FAM114A1Q8IWE2 563 aa22.38■■□□□ 1.17
VPS53-201ENST00000291074 PI4KBQ9UBF8 816 aa22.38■■□□□ 1.17
VPS53-201ENST00000291074 SEC31AO94979 1220 aaKnown RBP22.38■■□□□ 1.17
VPS53-201ENST00000291074 TAL1P17542 331 aaPredicted RBP22.38■■□□□ 1.17
VPS53-201ENST00000291074 ZHX1Q9UKY1 873 aaPredicted RBP22.38■■□□□ 1.17
VPS53-201ENST00000291074 PVALEFA0A1B0GWK0 134 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 PPP1R2P41236 205 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 COBLL1Q53SF7 1204 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 DHX36Q9H2U1 1008 aaKnown RBP22.37■■□□□ 1.17
VPS53-201ENST00000291074 FAM53CQ9NYF3 392 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 PCDHA12Q9UN75 941 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 CTAGE9A4FU28 777 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 ICA1Q05084 483 aa22.37■■□□□ 1.17
VPS53-201ENST00000291074 AOC3Q16853 763 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms