RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CTAGE6Q86UF2 777 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 CTAGE4Q8IX94 777 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 DDX12PQ92771 950 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 FGFBP2Q9BYJ0 223 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 CCSER1Q9C0I3 900 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 LRRC10BA6NIK2 292 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 RHOBTB3O94955 611 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 VSNL1P62760 191 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 JMJD4Q9H9V9 463 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 KRT18P05783 430 aaKnown RBP18.55■□□□□ 0.56
VPS54-201ENST00000272322 RRAGAQ7L523 313 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 LARP4BQ92615 738 aaKnown RBP18.55■□□□□ 0.56
VPS54-201ENST00000272322 NAA15Q9BXJ9 866 aaKnown RBP18.55■□□□□ 0.56
VPS54-201ENST00000272322 BCAS3Q9H6U6 928 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 TNNT3P45378 269 aaPredicted RBP18.54■□□□□ 0.56
VPS54-201ENST00000272322 CYP4A11Q02928 519 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 KRT79Q5XKE5 535 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 CCDC102AQ96A19 550 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 SPZ1Q9BXG8 430 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 NHEJ1Q9H9Q4 299 aaPredicted RBP18.54■□□□□ 0.56
VPS54-201ENST00000272322 PDE11AQ9HCR9 933 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 EHD2Q9NZN4 543 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 KIAA1024Q9UPX6 916 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 TRAF5O00463 557 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 TUBB4AP04350 444 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 HERVK_113P62684 666 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 ZYXQ15942 572 aaKnown RBP18.54■□□□□ 0.56
VPS54-201ENST00000272322 CCDC42Q96M95 316 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 MYO6Q9UM54 1294 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 PLCH1Q4KWH8 1693 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 CCNE1P24864 410 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 UBXN2AP68543 259 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 TDRD12Q587J7 1177 aaKnown RBP18.54■□□□□ 0.56
VPS54-201ENST00000272322 RSRC2Q7L4I2 434 aaKnown RBP18.54■□□□□ 0.56
VPS54-201ENST00000272322 JAKMIP2Q96AA8 810 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 PYM1Q9BRP8 204 aaKnown RBP18.54■□□□□ 0.56
VPS54-201ENST00000272322 ANKZF1Q9H8Y5 726 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 MLXIPQ9HAP2 919 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 BLOC1S4Q9NUP1 217 aa18.54■□□□□ 0.56
VPS54-201ENST00000272322 ZRANB2O95218 330 aaKnown RBP eCLIP18.53■□□□□ 0.56
VPS54-201ENST00000272322 HOXA13P31271 388 aaPredicted RBP18.53■□□□□ 0.56
VPS54-201ENST00000272322 TMEM266Q2M3C6 531 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 PNMA5Q96PV4 448 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 PSTPIP2Q9H939 334 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 DDX25Q9UHL0 483 aaKnown RBP18.53■□□□□ 0.56
VPS54-201ENST00000272322 BUB1O43683 1085 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 PLCG2P16885 1265 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 MMS19Q96T76 1030 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 RASSF10A6NK89 507 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 AKR1B10O60218 316 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 SLC1A4P43007 532 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 CDC42EP5Q6NZY7 148 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 RABGGTAQ92696 567 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 PCDHA12Q9UN75 941 aa18.53■□□□□ 0.56
VPS54-201ENST00000272322 POTEB3A0JP26 581 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 POTECB2RU33 542 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 BBOX1O75936 387 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 DNM2P50570 870 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 POTEBQ6S5H4 581 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 QTRT2Q9H974 415 aaKnown RBP18.52■□□□□ 0.56
VPS54-201ENST00000272322 PCDHA1Q9Y5I3 950 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 SNED1Q8TER0 1413 aa18.52■□□□□ 0.56
VPS54-201ENST00000272322 AMPD3Q01432 767 aa18.52■□□□□ 0.55
VPS54-201ENST00000272322 CACNA2D4Q7Z3S7 1137 aa18.52■□□□□ 0.55
VPS54-201ENST00000272322 FNBP4Q8N3X1 1017 aaPredicted RBP18.52■□□□□ 0.55
VPS54-201ENST00000272322 ANKS1AQ92625 1134 aa18.52■□□□□ 0.55
VPS54-201ENST00000272322 ARAP2Q8WZ64 1704 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 EDIL3O43854 480 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 TTLL1O95922 423 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 IL1R1P14778 569 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 ZNF507Q8TCN5 953 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.51■□□□□ 0.55
VPS54-201ENST00000272322 SFI1A8K8P3 1242 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 SEPT2Q15019 361 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 CCDC40Q4G0X9 1142 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 PRR16Q569H4 304 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 VPS18Q9P253 973 aa18.51■□□□□ 0.55
VPS54-201ENST00000272322 HERC4Q5GLZ8 1057 aaPredicted RBP18.51■□□□□ 0.55
VPS54-201ENST00000272322 DDTLA6NHG4 134 aaPredicted RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 H3BQF6 201 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 NCK2O43639 380 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 EEF1GP26641 437 aaKnown RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 LZTS2Q9BRK4 669 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 TMX4Q9H1E5 349 aaPredicted RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 A0A1B0GUL6 1792 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 MOCS3O95396 460 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 LMAN1P49257 510 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 CNNM4Q6P4Q7 775 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 SLF2Q8IX21 1173 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 FUT8Q9BYC5 575 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 PDS5AQ29RF7 1337 aaKnown RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 POTEFA5A3E0 1075 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 POTEIP0CG38 1075 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 EEF2P13639 858 aaKnown RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 POTEGQ6S5H5 508 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 POTEEQ6S8J3 1075 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 CEP112Q8N8E3 955 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 NOC3LQ8WTT2 800 aaKnown RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 RIN2Q8WYP3 895 aaPredicted RBP18.5■□□□□ 0.55
VPS54-201ENST00000272322 CCDC51Q96ER9 411 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms