RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 DDX20Q9UHI6 824 aaKnown RBP28.2■■■□□ 2.11
SSBP4-201ENST00000270061 PLEKHA8P1O95397 391 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 AKAP17AQ02040 695 aaKnown RBP28.19■■■□□ 2.1
SSBP4-201ENST00000270061 GRM4Q14833 912 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 CMTR1Q8N1G2 835 aaKnown RBP28.19■■■□□ 2.1
SSBP4-201ENST00000270061 DIS3LQ8TF46 1054 aaKnown RBP28.19■■■□□ 2.1
SSBP4-201ENST00000270061 DPF3Q92784 378 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 SPATA32Q96LK8 384 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 TINF2Q9BSI4 451 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 ACAD9Q9H845 621 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 TKFCQ3LXA3 575 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 RANBP17Q9H2T7 1088 aaKnown RBP28.19■■■□□ 2.1
SSBP4-201ENST00000270061 RNF146Q9NTX7 359 aa28.19■■■□□ 2.1
SSBP4-201ENST00000270061 MYH6P13533 1939 aa28.18■■■□□ 2.1
SSBP4-201ENST00000270061 DNAJC25-GNG10A0A024R161 153 aa28.18■■■□□ 2.1
SSBP4-201ENST00000270061 ALAS1P13196 640 aa28.18■■■□□ 2.1
SSBP4-201ENST00000270061 GNAQP50148 359 aa28.18■■■□□ 2.1
SSBP4-201ENST00000270061 GPATCH4Q5T3I0 446 aaKnown RBP28.18■■■□□ 2.1
SSBP4-201ENST00000270061 CAVIN1Q6NZI2 390 aaKnown RBP28.18■■■□□ 2.1
SSBP4-201ENST00000270061 CCDC82Q8N4S0 544 aa28.18■■■□□ 2.1
SSBP4-201ENST00000270061 PRAMEF19Q5SWL8 479 aa28.17■■■□□ 2.1
SSBP4-201ENST00000270061 SRBD1Q8N5C6 995 aaKnown RBP28.17■■■□□ 2.1
SSBP4-201ENST00000270061 TRERF1Q96PN7 1200 aa28.17■■■□□ 2.1
SSBP4-201ENST00000270061 RCOR1Q9UKL0 485 aa28.17■■■□□ 2.1
SSBP4-201ENST00000270061 CCPG1Q9ULG6 757 aa28.17■■■□□ 2.1
SSBP4-201ENST00000270061 CNTNAP5Q8WYK1 1306 aa28.17■■■□□ 2.1
SSBP4-201ENST00000270061 ALPK3Q96L96 1907 aa28.17■■■□□ 2.1
SSBP4-201ENST00000270061 U2AF2P26368 475 aaKnown RBP eCLIP28.16■■■□□ 2.11e-7■□□□□ 8
SSBP4-201ENST00000270061 PKN1Q16512 942 aa28.16■■■□□ 2.1
SSBP4-201ENST00000270061 RBM27Q9P2N5 1060 aaKnown RBP28.16■■■□□ 2.1
SSBP4-201ENST00000270061 SEPT4O43236 478 aa28.16■■■□□ 2.1
SSBP4-201ENST00000270061 ICAM1P05362 532 aa28.16■■■□□ 2.1
SSBP4-201ENST00000270061 MNX1P50219 401 aaPredicted RBP28.16■■■□□ 2.1
SSBP4-201ENST00000270061 NRBP1Q9UHY1 535 aa28.16■■■□□ 2.1
SSBP4-201ENST00000270061 KIF28PB7ZC32 967 aa28.15■■■□□ 2.1
SSBP4-201ENST00000270061 MMP1P03956 469 aa28.15■■■□□ 2.1
SSBP4-201ENST00000270061 MSL3Q8N5Y2 521 aaKnown RBP28.15■■■□□ 2.1
SSBP4-201ENST00000270061 V9GY48 417 aaPredicted RBP28.15■■■□□ 2.1
SSBP4-201ENST00000270061 GOLGA8HP0CJ92 632 aa28.14■■■□□ 2.1
SSBP4-201ENST00000270061 XBP1P17861 261 aa28.14■■■□□ 2.1
SSBP4-201ENST00000270061 MYSM1Q5VVJ2 828 aa28.14■■■□□ 2.1
SSBP4-201ENST00000270061 SYAP1Q96A49 352 aaPredicted RBP28.14■■■□□ 2.1
SSBP4-201ENST00000270061 LZTS2Q9BRK4 669 aa28.14■■■□□ 2.1
SSBP4-201ENST00000270061 MAD2L2Q9UI95 211 aa28.14■■■□□ 2.1
SSBP4-201ENST00000270061 PALM3A6NDB9 673 aaPredicted RBP28.14■■■□□ 2.09
SSBP4-201ENST00000270061 DEKP35659 375 aaKnown RBP28.14■■■□□ 2.09
SSBP4-201ENST00000270061 ZNF467Q7Z7K2 595 aaPredicted RBP28.14■■■□□ 2.09
SSBP4-201ENST00000270061 USP28Q96RU2 1077 aa28.14■■■□□ 2.09
SSBP4-201ENST00000270061 C11orf49Q9H6J7 331 aa28.14■■■□□ 2.09
SSBP4-201ENST00000270061 A1CFQ9NQ94 594 aaKnown RBP28.14■■■□□ 2.09
SSBP4-201ENST00000270061 RTEL1Q9NZ71 1219 aa28.14■■■□□ 2.09
SSBP4-201ENST00000270061 TMEM63CQ9P1W3 806 aa28.14■■■□□ 2.09
SSBP4-201ENST00000270061 SAFBQ15424 915 aaKnown RBP eCLIP28.13■■■□□ 2.09
SSBP4-201ENST00000270061 PFASO15067 1338 aa28.13■■■□□ 2.09
SSBP4-201ENST00000270061 SYNGAP1Q96PV0 1343 aa28.13■■■□□ 2.09
SSBP4-201ENST00000270061 MAMDC4Q6UXC1 1216 aa28.12■■■□□ 2.09
SSBP4-201ENST00000270061 FOXP1Q9H334 677 aaPredicted RBP28.12■■■□□ 2.09
SSBP4-201ENST00000270061 POTEB2H3BUK9 544 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 ZNF445P59923 1031 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 ZSCAN23Q3MJ62 389 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 ASPRV1Q53RT3 343 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 MUM1L1Q5H9M0 696 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 ANO1Q5XXA6 986 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 POLR3EQ9NVU0 708 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 PNMA2Q9UL42 364 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 SMARCA1P28370 1054 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 UBA5Q9GZZ9 404 aa28.11■■■□□ 2.09
SSBP4-201ENST00000270061 PARP1P09874 1014 aaKnown RBP28.1■■■□□ 2.09
SSBP4-201ENST00000270061 TAL1P17542 331 aaPredicted RBP28.1■■■□□ 2.09
SSBP4-201ENST00000270061 STAG2Q8N3U4 1231 aa28.1■■■□□ 2.09
SSBP4-201ENST00000270061 LCTP09848 1927 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 FSD2A1L4K1 749 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 EVI5O60447 810 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 YEATS4O95619 227 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 CNTN2Q02246 1040 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 GNL2Q13823 731 aaKnown RBP28.09■■■□□ 2.09
SSBP4-201ENST00000270061 PFKFB3Q16875 520 aaPredicted RBP28.09■■■□□ 2.09
SSBP4-201ENST00000270061 FAM133AQ8N9E0 248 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 FGD4Q96M96 766 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 CPVLQ9H3G5 476 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 NR2E3Q9Y5X4 410 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 SNAI1O95863 264 aaPredicted RBP28.09■■■□□ 2.09
SSBP4-201ENST00000270061 ZNF865P0CJ78 1059 aaPredicted RBP28.09■■■□□ 2.09
SSBP4-201ENST00000270061 NASPP49321 788 aaPredicted RBP28.09■■■□□ 2.09
SSBP4-201ENST00000270061 NSMFQ6X4W1 530 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 PGBD1Q96JS3 809 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 PHF20Q9BVI0 1012 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 CYP39A1Q9NYL5 469 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 KCNJ14Q9UNX9 436 aa28.09■■■□□ 2.09
SSBP4-201ENST00000270061 H0YGN5 161 aa28.08■■■□□ 2.09
SSBP4-201ENST00000270061 COL6A1P12109 1028 aa28.08■■■□□ 2.09
SSBP4-201ENST00000270061 SCG2P13521 617 aa28.08■■■□□ 2.09
SSBP4-201ENST00000270061 DIS3L2Q8IYB7 885 aaKnown RBP28.08■■■□□ 2.09
SSBP4-201ENST00000270061 ARRDC4Q8NCT1 418 aa28.08■■■□□ 2.09
SSBP4-201ENST00000270061 GOLGA6L4A6NEF3 574 aa28.07■■■□□ 2.08
SSBP4-201ENST00000270061 DNM1LO00429 736 aa28.07■■■□□ 2.08
SSBP4-201ENST00000270061 RARBP10826 455 aa28.07■■■□□ 2.08
SSBP4-201ENST00000270061 NOSTRINQ8IVI9 506 aa28.07■■■□□ 2.08
SSBP4-201ENST00000270061 LINC00301Q8NCQ3 95 aa28.07■■■□□ 2.08
SSBP4-201ENST00000270061 SPZ1Q9BXG8 430 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms