RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 GHRHRQ02643 423 aa18.67■□□□□ 0.58
USE1-201ENST00000263897 GPR153Q6NV75 609 aa18.67■□□□□ 0.58
USE1-201ENST00000263897 SAMD3Q8N6K7 520 aa18.67■□□□□ 0.58
USE1-201ENST00000263897 TMEM87BQ96K49 555 aa18.67■□□□□ 0.58
USE1-201ENST00000263897 MAP3K20Q9NYL2 800 aaKnown RBP18.67■□□□□ 0.58
USE1-201ENST00000263897 PNMA6FA0A0J9YX94 578 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 TXNP10599 105 aaKnown RBP18.66■□□□□ 0.58
USE1-201ENST00000263897 HSD17B4P51659 736 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 ITGA7Q13683 1181 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 COL9A3Q14050 684 aaPredicted RBP18.66■□□□□ 0.58
USE1-201ENST00000263897 PPP2R5BQ15173 497 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 SHHQ15465 462 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 STXBP2Q15833 593 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 HOMER1Q86YM7 354 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 FAM126BQ8IXS8 530 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 ZNF654Q8IZM8 581 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 SEZ6LQ9BYH1 1024 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 TBX21Q9UL17 535 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 GRIN2DO15399 1336 aa18.66■□□□□ 0.58
USE1-201ENST00000263897 TLR3O15455 904 aaKnown RBP18.65■□□□□ 0.58
USE1-201ENST00000263897 CDC45O75419 566 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 DDAH1O94760 285 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 TIMP1P01033 207 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 SMARCA1P28370 1054 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 TTLL4Q14679 1199 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 ARHGEF16Q5VV41 709 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 OR6J1Q8NGC5 347 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 POLR3EQ9NVU0 708 aa18.65■□□□□ 0.58
USE1-201ENST00000263897 SH2B2O14492 632 aaPredicted RBP18.64■□□□□ 0.57
USE1-201ENST00000263897 CD4P01730 458 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 NR3C2P08235 984 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 KIF5BP33176 963 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 LIFRP42702 1097 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 CPT1AP50416 773 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 C9orf50Q5SZB4 431 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 RNF20Q5VTR2 975 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 CCDC62Q6P9F0 684 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 NFXL1Q6ZNB6 911 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 CTCFLQ8NI51 663 aaPredicted RBP18.64■□□□□ 0.57
USE1-201ENST00000263897 COPS5Q92905 334 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 MYL10Q9BUA6 226 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 PXMP2Q9NR77 195 aa18.64■□□□□ 0.57
USE1-201ENST00000263897 SZT2Q5T011 3432 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 CCDC69A6NI79 296 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 A6NJR5 290 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 EIF3JO75822 258 aaKnown RBP18.63■□□□□ 0.57
USE1-201ENST00000263897 ARIH2O95376 493 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 EIF2AK2P19525 551 aaKnown RBP18.63■□□□□ 0.57
USE1-201ENST00000263897 PSMC6P62333 389 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 PURAQ00577 322 aaKnown RBP18.63■□□□□ 0.57
USE1-201ENST00000263897 FPGSQ05932 587 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 BRDTQ58F21 947 aaPredicted RBP18.63■□□□□ 0.57
USE1-201ENST00000263897 SEPT14Q6ZU15 432 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 SPZ1Q9BXG8 430 aa18.63■□□□□ 0.57
USE1-201ENST00000263897 KIAA1217Q5T5P2 1943 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 KPNA6O60684 536 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 MYL3P08590 195 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 HOXA13P31271 388 aaPredicted RBP18.62■□□□□ 0.57
USE1-201ENST00000263897 GNAQP50148 359 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 EPHB4P54760 987 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 TSGA10IPQ3SY00 556 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 MFSD5Q6N075 450 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 LZTS2Q9BRK4 669 aa18.62■□□□□ 0.57
USE1-201ENST00000263897 GCOM1H8Y6P7 765 aaPredicted RBP18.61■□□□□ 0.57
USE1-201ENST00000263897 POLR2MP0CAP2 368 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 CALM1P0DP23 149 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 CALM2P0DP24 149 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 CALM3P0DP25 149 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 LY6KQ17RY6 165 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 PIBF1Q8WXW3 757 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 RRP36Q96EU6 259 aaKnown RBP18.61■□□□□ 0.57
USE1-201ENST00000263897 NEK1Q96PY6 1258 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 PDCD2LQ9BRP1 358 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 MTG1Q9BT17 334 aaPredicted RBP18.61■□□□□ 0.57
USE1-201ENST00000263897 LRRC2Q9BYS8 371 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 LAMA3Q16787 3333 aa18.61■□□□□ 0.57
USE1-201ENST00000263897 GH1P01241 217 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 EXOSC10Q01780 885 aaKnown RBP18.6■□□□□ 0.57
USE1-201ENST00000263897 VSIG10LQ86VR7 867 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 SGMS1Q86VZ5 419 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 RASEFQ8IZ41 740 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 SRBD1Q8N5C6 995 aaKnown RBP18.6■□□□□ 0.57
USE1-201ENST00000263897 DEFB123Q8N688 67 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 TRPV6Q9H1D0 765 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 DDX41Q9UJV9 622 aaKnown RBP18.6■□□□□ 0.57
USE1-201ENST00000263897 SLC12A7Q9Y666 1083 aa18.6■□□□□ 0.57
USE1-201ENST00000263897 MYCLP12524 364 aaPredicted RBP18.59■□□□□ 0.57
USE1-201ENST00000263897 RXRAP19793 462 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 ARHGAP1Q07960 439 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 PGM5Q15124 567 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 FCHSD1Q86WN1 690 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 TMEM199Q8N511 208 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 FANCBQ8NB91 859 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 PPP1R12CQ9BZL4 782 aa18.59■□□□□ 0.57
USE1-201ENST00000263897 ALDH8A1Q9H2A2 487 aaPredicted RBP18.59■□□□□ 0.57
USE1-201ENST00000263897 B4GALT4O60513 344 aa18.58■□□□□ 0.56
USE1-201ENST00000263897 RGS20O76081 388 aa18.58■□□□□ 0.56
USE1-201ENST00000263897 PLEKHA8P1O95397 391 aa18.58■□□□□ 0.56
USE1-201ENST00000263897 CYP2C18P33260 490 aa18.58■□□□□ 0.56
USE1-201ENST00000263897 PPIGQ13427 754 aaKnown RBP eCLIP18.58■□□□□ 0.568e-6■■■■□ 22.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms