RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 USP17L19D6RCP7 530 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 USP17L20D6RJB6 530 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 CTIFO43310 598 aaKnown RBP14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 BMP3P12645 472 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 DPEP1P16444 411 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 USP11P51784 963 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 USP17L24Q0WX57 530 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 AP3B2Q13367 1082 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 SYDE2Q5VT97 1194 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 CNNM4Q6P4Q7 775 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 USP17L6PQ6QN14 398 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 FBXO11Q86XK2 927 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 CREBRFQ8IUR6 639 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 SNX29Q8TEQ0 813 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 LARP4BQ92615 738 aaKnown RBP14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 TRIM47Q96LD4 638 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 PNMA5Q96PV4 448 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 LRRC27Q9C0I9 530 aa14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 ZNF277Q9NRM2 450 aaPredicted RBP14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 ZNF70Q9UC06 446 aaPredicted RBP14.5□□□□□ -0.09
SPTLC1-201ENST00000262554 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.5□□□□□ -0.092e-11■■■□□ 15.7
SPTLC1-201ENST00000262554 TRIM49BA6NDI0 452 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 EEF1GP26641 437 aaKnown RBP14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 RBL2Q08999 1139 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 SLC16A10Q8TF71 515 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 FAM151AQ8WW52 585 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 GMLQ99445 158 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 NUP88Q99567 741 aaPredicted RBP14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 NAA15Q9BXJ9 866 aaKnown RBP14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 ANO3Q9BYT9 981 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 VPS16Q9H269 839 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 ARHGEF10LQ9HCE6 1279 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 BLOC1S4Q9NUP1 217 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 TAB2Q9NYJ8 693 aa14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 MAGEC2Q9UBF1 373 aaPredicted RBP14.49□□□□□ -0.09
SPTLC1-201ENST00000262554 KIF13BQ9NQT8 1826 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 CLRN2A0PK11 232 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 RRP9O43818 475 aaKnown RBP14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 KCNA3P22001 575 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 TRIM14Q14142 442 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 BTNL9Q6UXG8 535 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 MTERF4Q7Z6M4 381 aaKnown RBP14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 CNGA4Q8IV77 575 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 RAD54LQ92698 747 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 HAS1Q92839 578 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 MAP7D2Q96T17 732 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 PCDHA12Q9UN75 941 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 PPP2R2CQ9Y2T4 447 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 PVALEFA0A1B0GWK0 134 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 GOLGA6L9A6NEM1 432 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 CCNE1P24864 410 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 JAG1P78504 1218 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 MCM6Q14566 821 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 RRP1BQ14684 758 aaKnown RBP14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 TMEM119Q4V9L6 283 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 COBLL1Q53SF7 1204 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 TTI2Q6NXR4 508 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 MOXD1Q6UVY6 613 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 NIM1KQ8IY84 436 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 P2RX5Q93086 422 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 CCDC51Q96ER9 411 aa14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 SRRTQ9BXP5 876 aaKnown RBP14.48□□□□□ -0.09
SPTLC1-201ENST00000262554 KDM3AQ9Y4C1 1321 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 COL4A5P29400 1685 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 CYP3A7-CYP3A51PA0A087WV96 503 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 MEIS2O14770 477 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 MFAP3LO75121 409 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 CYP3A7P24462 503 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 HOXA7P31268 230 aaPredicted RBP14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 PMS1P54277 932 aaKnown RBP14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 STK4Q13043 487 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 HSP90AA2PQ14568 343 aaPredicted RBP14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 SYT10Q6XYQ8 523 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 UNC13DQ70J99 1090 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 IRF2BP1Q8IU81 584 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 FAM114A1Q8IWE2 563 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 REXO1L1PQ8IX06 675 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 SPDYE1Q8NFV5 336 aaPredicted RBP14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 CPLX3Q8WVH0 158 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 TSC1Q92574 1164 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 ZNRF3Q9ULT6 936 aa14.47□□□□□ -0.09
SPTLC1-201ENST00000262554 A0A1W2PRG0 241 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 SLC26A4O43511 780 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 FOSP01100 380 aaPredicted RBP14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 CASP14P31944 242 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 SNAP25P60880 206 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 ETF1P62495 437 aaKnown RBP14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 UBXN1Q04323 297 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 TRAF1Q13077 416 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 SYCP1Q15431 976 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 USH1GQ495M9 461 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 FKBP1CQ5VVH2 108 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 CSGALNACT2Q8N6G5 542 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 AGBL3Q8NEM8 1001 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 NT5C3AQ9H0P0 336 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 GOPCQ9HD26 462 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 CNTNAP1P78357 1384 aa14.46□□□□□ -0.09
SPTLC1-201ENST00000262554 MYMKA6NI61 221 aa14.46□□□□□ -0.1
SPTLC1-201ENST00000262554 SPDYE3A6NKU9 549 aa14.46□□□□□ -0.1
SPTLC1-201ENST00000262554 GYPCP04921 128 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms