RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 KRT79Q5XKE5 535 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 E4F1Q66K89 784 aaPredicted RBP20.75■□□□□ 0.91
HOXC11-201ENST00000243082 MCTP2Q6DN12 878 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 SV2BQ7L1I2 683 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 SNX29Q8TEQ0 813 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 KCNMB3Q9NPA1 279 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 PPP1R1BQ9UD71 204 aaPredicted RBP20.75■□□□□ 0.91
HOXC11-201ENST00000243082 PBX1P40424 430 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 ZNF280AP59817 542 aaPredicted RBP20.75■□□□□ 0.91
HOXC11-201ENST00000243082 TMEM119Q4V9L6 283 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 MOXD1Q6UVY6 613 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 LIMA1Q9UHB6 759 aaKnown RBP20.75■□□□□ 0.91
HOXC11-201ENST00000243082 PCDHA12Q9UN75 941 aa20.75■□□□□ 0.91
HOXC11-201ENST00000243082 EGFRP00533 1210 aa20.74■□□□□ 0.91
HOXC11-201ENST00000243082 PMS1P54277 932 aaKnown RBP20.74■□□□□ 0.91
HOXC11-201ENST00000243082 ASIC1P78348 528 aa20.74■□□□□ 0.91
HOXC11-201ENST00000243082 ARHGAP4P98171 946 aa20.74■□□□□ 0.91
HOXC11-201ENST00000243082 MCM6Q14566 821 aa20.74■□□□□ 0.91
HOXC11-201ENST00000243082 ECM1Q16610 540 aa20.74■□□□□ 0.91
HOXC11-201ENST00000243082 LARP4BQ92615 738 aaKnown RBP20.74■□□□□ 0.91
HOXC11-201ENST00000243082 VCPKMTQ9H867 229 aa20.74■□□□□ 0.91
HOXC11-201ENST00000243082 SCAF8Q9UPN6 1271 aaKnown RBP20.74■□□□□ 0.91
HOXC11-201ENST00000243082 TRIM49BA6NDI0 452 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 H7C1D1 291 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 NRDCO43847 1150 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 PDE4DQ08499 809 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 KRT31Q15323 416 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 KCNK18Q7Z418 384 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 CCDC112Q8NEF3 446 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 RAD54LQ92698 747 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 CDK5RAP3Q96JB5 506 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 TRMT1Q9NXH9 659 aaKnown RBP20.73■□□□□ 0.91
HOXC11-201ENST00000243082 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.73■□□□□ 0.91
HOXC11-201ENST00000243082 UQCRHLA0A096LP55 91 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 MYMKA6NI61 221 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 MARCH6O60337 910 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 FOSP01100 380 aaPredicted RBP20.73■□□□□ 0.91
HOXC11-201ENST00000243082 UQCRHP07919 91 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 TNNT1P13805 278 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 STK4Q13043 487 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 RASA3Q14644 834 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 NYAP1Q6ZVC0 841 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 IRF2BP1Q8IU81 584 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 TMEM139Q8IV31 216 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 TC2NQ8N9U0 490 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 GLIS2Q9BZE0 524 aaPredicted RBP20.73■□□□□ 0.91
HOXC11-201ENST00000243082 EXOC1Q9NV70 894 aa20.73■□□□□ 0.91
HOXC11-201ENST00000243082 SREBF1P36956 1147 aa20.72■□□□□ 0.91
HOXC11-201ENST00000243082 SPAG1Q07617 926 aa20.72■□□□□ 0.91
HOXC11-201ENST00000243082 STIM1Q13586 685 aa20.72■□□□□ 0.91
HOXC11-201ENST00000243082 TCP11X2Q5H9J9 407 aa20.72■□□□□ 0.91
HOXC11-201ENST00000243082 CCDC47Q96A33 483 aaKnown RBP20.72■□□□□ 0.91
HOXC11-201ENST00000243082 SGIP1Q9BQI5 828 aa20.72■□□□□ 0.91
HOXC11-201ENST00000243082 PHF20L1A8MW92 1017 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 PIK3CDO00329 1044 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 PSMA7O14818 248 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 FCER1AP12319 257 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 RPS12P25398 132 aaKnown RBP20.71■□□□□ 0.91
HOXC11-201ENST00000243082 FILIP1LQ4L180 1135 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 HYIQ5T013 277 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 MYRIPQ8NFW9 859 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 DHTKD1Q96HY7 919 aaPredicted RBP20.71■□□□□ 0.91
HOXC11-201ENST00000243082 TEPSINQ96N21 525 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 BCS1LQ9Y276 419 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 PSDA5PKW4 1024 aaPredicted RBP20.71■□□□□ 0.91
HOXC11-201ENST00000243082 SPDYE3A6NKU9 549 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 KCNJ18B7U540 433 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 PLA2G6O60733 806 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 HOXA13P31271 388 aaPredicted RBP20.71■□□□□ 0.91
HOXC11-201ENST00000243082 KCNJ12Q14500 433 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 ZYXQ15942 572 aaKnown RBP20.71■□□□□ 0.91
HOXC11-201ENST00000243082 Q4G0T1 1027 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 TTI2Q6NXR4 508 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 ETNPPLQ8TBG4 499 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 CHURC1Q8WUH1 139 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 UIMC1Q96RL1 719 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 RANBP17Q9H2T7 1088 aaKnown RBP20.71■□□□□ 0.91
HOXC11-201ENST00000243082 SMCHD1A6NHR9 2005 aa20.71■□□□□ 0.91
HOXC11-201ENST00000243082 ASNSP08243 561 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 CCT6AP40227 531 aaKnown RBP20.7■□□□□ 0.9
HOXC11-201ENST00000243082 ADKP55263 362 aaKnown RBP20.7■□□□□ 0.9
HOXC11-201ENST00000243082 COBLL1Q53SF7 1204 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 CNNM4Q6P4Q7 775 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 CCDC84Q86UT8 332 aaPredicted RBP20.7■□□□□ 0.9
HOXC11-201ENST00000243082 LENG9Q96B70 501 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 GTPBP4Q9BZE4 634 aaKnown RBP20.7■□□□□ 0.9
HOXC11-201ENST00000243082 SH2D4AQ9H788 454 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 CD2APQ9Y5K6 639 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 LTBP3Q9NS15 1303 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 PVALEFA0A1B0GWK0 134 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 CIITAP33076 1130 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 PRELPP51888 382 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 COPB1P53618 953 aaKnown RBP20.7■□□□□ 0.9
HOXC11-201ENST00000243082 R3HDM1Q15032 1099 aaKnown RBP20.7■□□□□ 0.9
HOXC11-201ENST00000243082 UNC13DQ70J99 1090 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 SLFN12Q8IYM2 578 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 KIFC2Q96AC6 838 aa20.7■□□□□ 0.9
HOXC11-201ENST00000243082 FAM86B1E9PN63 330 aa20.69■□□□□ 0.9
HOXC11-201ENST00000243082 FAM86B2P0C5J1 330 aa20.69■□□□□ 0.9
HOXC11-201ENST00000243082 TRAF1Q13077 416 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms